View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4906-Insertion-1 (Length: 472)
Name: NF4906-Insertion-1
Description: NF4906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4906-Insertion-1 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 8 - 472
Target Start/End: Complemental strand, 3256136 - 3255659
Alignment:
| Q |
8 |
cataggttttatttataggaaactaataaaaaatat----aatattttatattgtggttttaggtctgctatgatgatctgactttgtgtcagaggtctt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3256136 |
cataggttttatttataggaaactaataaaaaatattattaatattttatattgttgttttaggtctgctatgatgatctgactttgtgtcagaggtctt |
3256037 |
T |
|
| Q |
104 |
ctggttcac---------ttaataatgatggaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctccc |
194 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3256036 |
ctggttcacagcaggcacttaataatgatggaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctccc |
3255937 |
T |
|
| Q |
195 |
aacaaaactctctttcactacaacagttctttcgaaacggtggagcaaactatgttgttcactacctgttctttgctttgaagatgaaaccaccaaagat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3255936 |
aacaaaactctctttcactacaacagttctttcgaaacggtggagcaaactatgttgttcactacctgttctttgctttgaagatgaaaccaccaaagat |
3255837 |
T |
|
| Q |
295 |
tatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcatt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| || |
|
|
| T |
3255836 |
tatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccctcaaaatgtttcgcctcaagtgtcgtt |
3255737 |
T |
|
| Q |
395 |
ttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaag |
472 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3255736 |
ttaaagaccacaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaag |
3255659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 7813983 - 7814076
Alignment:
| Q |
134 |
tggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttc |
227 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| |||||||| | |||||||||||| |||||| ||||| ||||||| || ||||| |
|
|
| T |
7813983 |
tggtggatagaatcagcgatttaccggatgagttattgtctcacattctctcttttctcccaactaaactcgctttctctacaaccgtactttc |
7814076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 266
Target Start/End: Original strand, 7871216 - 7871340
Alignment:
| Q |
142 |
agaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtggagca |
241 |
Q |
| |
|
||||||||| |||||| |||||||| ||| ||||||| | ||| |||||||| |||||| ||||||||||||| ||||||| |||||||||| | |
|
|
| T |
7871216 |
agaatcagtagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacaacccttctttccaaacggtggatcc |
7871315 |
T |
|
| Q |
242 |
aactatgttgttcactacctgttct |
266 |
Q |
| |
|
|||||| | |||||| |||||||| |
|
|
| T |
7871316 |
cactatgctattcactccctgttct |
7871340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 7806893 - 7806822
Alignment:
| Q |
132 |
tttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaact |
203 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| ||| ||||||| | |||||||| ||| ||||| |
|
|
| T |
7806893 |
tttggtcgatagaataagtgatttaccagatgagttactgctttacattctctcttttctccaaaccaaact |
7806822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 136 - 266
Target Start/End: Original strand, 14017655 - 14017785
Alignment:
| Q |
136 |
gtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggt |
235 |
Q |
| |
|
||||||||||| || |||||| | ||||||||||||| ||||| |||||||||||||||||||| | ||||||||||| | |||||||||||| ||| |
|
|
| T |
14017655 |
gtcgatagaattagcgatttatcagatgagttattgcggcacatactttgttttctcccaacaaatattgctttcactacatccgttctttcgaaaaggt |
14017754 |
T |
|
| Q |
236 |
ggagcaaactatgttgttcactacctgttct |
266 |
Q |
| |
|
||| ||||||||| | || ||| |||||||| |
|
|
| T |
14017755 |
ggaccaaactatgctatttactccctgttct |
14017785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 274 - 471
Target Start/End: Original strand, 14020277 - 14020478
Alignment:
| Q |
274 |
gaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaac----ccttc |
369 |
Q |
| |
|
|||||||||| || ||| |||||||| | ||| | |||||||| ||||||| |||||||| |||||||||||| |||||| || |||| || || |
|
|
| T |
14020277 |
gaagatgaaatcatcaacgattatgatgtcttaccatgcttctgttgcattgtcaatactatcatgctctctcctcatgcaaccaaccaactaaaccctc |
14020376 |
T |
|
| Q |
370 |
aaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgagg |
469 |
Q |
| |
|
|||| |||| ||||||| | || || || | ||| ||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||| |||| |
|
|
| T |
14020377 |
aaaatgtttcgcctcaactttcgttatagataccacaagcaaaatcgtccatttaatgtgacaaaatggctagaagccacaaaagagcgttgtatcgagg |
14020476 |
T |
|
| Q |
470 |
aa |
471 |
Q |
| |
|
|| |
|
|
| T |
14020477 |
aa |
14020478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 471
Target Start/End: Original strand, 14271406 - 14271567
Alignment:
| Q |
311 |
gcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatca |
410 |
Q |
| |
|
||||||| | |||||| ||| |||| ||||||||| ||||||||| || ||||| |||||| |||| ||||||| | || |||| | || ||| || |
|
|
| T |
14271406 |
gcttctgccacattgtcaatattatcatgctctctcttcgtgcaaccaacaaacccctcaaaatgtttcgcctcaactttcgttttggatgccacaagca |
14271505 |
T |
|
| Q |
411 |
aaagg-gtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaa |
471 |
Q |
| |
|
||| |||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
14271506 |
aaaatagtccatttaatgtgtcaaaatggctagaagccacaaaagagcgttgtattgaggaa |
14271567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 471
Target Start/End: Original strand, 14017848 - 14017972
Alignment:
| Q |
347 |
ctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagc |
446 |
Q |
| |
|
|||||| ||| ||||||||| |||||| ||| ||||||| |||| |||| || ||||| ||||| || |||||||| ||| | ||||||||||||| |
|
|
| T |
14017848 |
ctcgtgtaaccaatcaacccctcaaaatctttagcctcaactgtcgctttatggaacgcaagcaaaatagttcatttaatttgaaaaaatggctagaagc |
14017947 |
T |
|
| Q |
447 |
ctcaaaacagcgtagtattgaggaa |
471 |
Q |
| |
|
| |||||| | | ||||||||||| |
|
|
| T |
14017948 |
cacaaaacgacattgtattgaggaa |
14017972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 238
Target Start/End: Complemental strand, 37997793 - 37997616
Alignment:
| Q |
55 |
ttgtggttttaggtctgctatgatgatctgactttgtgtcagaggtcttctggttcacttaataatgatggaaacagtttggtcgatagaatcagtgatt |
154 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| || || |||| || |||| | |||| ||| |||| ||||| |||||||||||| |||| |
|
|
| T |
37997793 |
ttgtggttttaggtgtgttatgatgatctgactttatgccaaaggt------gtgcactctacaatggtggcaacaatttggacgatagaatcagcgatt |
37997700 |
T |
|
| Q |
155 |
taccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtgga |
238 |
Q |
| |
|
|||| |||||||||||| |||| || | |||||| |||| |||||| |||| |||||||| |||||||| || ||||||| |
|
|
| T |
37997699 |
taccagatgagttattgtgttacatactctcttttctaccaatgaaactcgcttttactacaactgttctttcaaagcggtgga |
37997616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 19317795 - 19317704
Alignment:
| Q |
125 |
gaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactaca |
216 |
Q |
| |
|
||||||||| || |||||||| || |||||||| |||||||||||| ||||||| | |||||||||||||||||| |||| |||||| |
|
|
| T |
19317795 |
gaaacagttcagtggatagaataagcgatttaccagatgagttattgatttacattctctcttttctcccaacaaaactagcttttactaca |
19317704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University