View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4906_high_2 (Length: 617)
Name: NF4906_high_2
Description: NF4906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4906_high_2 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 9e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 447 - 617
Target Start/End: Complemental strand, 41046094 - 41045924
Alignment:
| Q |
447 |
gtggcctaaactacagaacattttttcctcataataaaatgaaattaattttgagatcagctgaagcaataaggctccaattcatgcacatccttcaatc |
546 |
Q |
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| T |
41046094 |
gtggcctaaactacagaacattttttcctcataataaaatgaaattgattttgagatcagctgaagcaataagtctccaattcatgcacatccttcaatc |
41045995 |
T |
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| Q |
547 |
aagcctctcatttctctcctccatttcttcacaccattttcaatttgaccaaaaaacaccaatcaacaaaa |
617 |
Q |
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| T |
41045994 |
aagcctctcatttctctcctccatttcttcacaccattttcaatttgaccaaaaaacaccaatcaacaaaa |
41045924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 41046504 - 41046340
Alignment:
| Q |
18 |
tttttattgtaaatgaaattatctctttttgattattgttacagacataattattcttttcttgagttgtcccaattttttattacggnnnnnnnaaatg |
117 |
Q |
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| T |
41046504 |
tttttattgtaaatgaaattatctctttttgattattgttacagacataattattcttttcttgagttgtcccaattttttattacggtttttttaaatg |
41046405 |
T |
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| Q |
118 |
attaaaattgatcttcactctaaaatgtaactgagtgacaatggtataaaataaaccagttagta |
182 |
Q |
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| T |
41046404 |
attaaaattcatcttcactctaaaatgtaactgagtgacaatggtataaaataaatcagttagta |
41046340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 233 - 377
Target Start/End: Complemental strand, 41046309 - 41046164
Alignment:
| Q |
233 |
gaaattattattaaaagcgatgccattaatgaacattt-acaacataggtggaatttaaaccatatactttgacgttacaaattcaagctcttaccattt |
331 |
Q |
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| T |
41046309 |
gaaattattattaaaagcgatgccattaatgaacattttacaacataggtggaatttaaaccatatactttgacgttataaattcaagctcttaccattt |
41046210 |
T |
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| Q |
332 |
agttgacacgtcttaaacttaaaacctattcatgtagttatgaatc |
377 |
Q |
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| T |
41046209 |
agttgacacgtcttaaacttaaaacctattcatgtagttatgaatc |
41046164 |
T |
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