View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4906_high_3 (Length: 494)

Name: NF4906_high_3
Description: NF4906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4906_high_3
NF4906_high_3
[»] chr3 (10 HSPs)
chr3 (17-483)||(18434168-18434634)
chr3 (55-162)||(37191911-37192018)
chr3 (295-404)||(31195174-31195283)
chr3 (295-404)||(52773030-52773139)
chr3 (310-413)||(19586683-19586786)
chr3 (330-404)||(8836235-8836309)
chr3 (316-413)||(12285511-12285608)
chr3 (247-380)||(37192103-37192236)
chr3 (319-398)||(53978153-53978232)
chr3 (330-404)||(55310170-55310244)
[»] chr2 (8 HSPs)
chr2 (17-483)||(30153396-30153861)
chr2 (346-449)||(23680882-23680985)
chr2 (330-413)||(20483661-20483744)
chr2 (331-404)||(13130806-13130879)
chr2 (346-401)||(27689086-27689141)
chr2 (330-426)||(27036126-27036222)
chr2 (302-413)||(28017412-28017523)
chr2 (341-389)||(37176524-37176572)
[»] chr8 (8 HSPs)
chr8 (17-215)||(6934280-6934477)
chr8 (55-162)||(2996337-2996444)
chr8 (245-310)||(6934474-6934539)
chr8 (249-402)||(19991192-19991345)
chr8 (303-439)||(44289935-44290071)
chr8 (301-380)||(2996583-2996662)
chr8 (319-398)||(15193135-15193214)
chr8 (316-398)||(15757401-15757483)
[»] chr5 (4 HSPs)
chr5 (290-431)||(17386835-17386976)
chr5 (302-413)||(16990826-16990937)
chr5 (330-404)||(26472138-26472212)
chr5 (313-383)||(20324056-20324126)
[»] chr7 (3 HSPs)
chr7 (307-439)||(15537121-15537253)
chr7 (295-404)||(16256520-16256629)
chr7 (346-401)||(13711528-13711583)
[»] chr6 (10 HSPs)
chr6 (55-162)||(34823632-34823739)
chr6 (295-404)||(26133443-26133552)
chr6 (259-405)||(14814958-14815104)
chr6 (313-383)||(20699259-20699329)
chr6 (313-372)||(28939049-28939108)
chr6 (346-401)||(31401798-31401853)
chr6 (301-380)||(34823878-34823957)
chr6 (331-393)||(12301015-12301077)
chr6 (302-413)||(6342383-6342494)
chr6 (346-394)||(6569604-6569652)
[»] chr1 (8 HSPs)
chr1 (346-449)||(37738757-37738860)
chr1 (259-405)||(2359717-2359863)
chr1 (331-449)||(6530897-6531015)
chr1 (316-413)||(52777891-52777988)
chr1 (313-410)||(32612441-32612538)
chr1 (319-398)||(49641067-49641146)
chr1 (319-419)||(9797098-9797198)
chr1 (71-115)||(9797402-9797446)
[»] chr4 (9 HSPs)
chr4 (259-405)||(5239500-5239646)
chr4 (259-405)||(10652897-10653043)
chr4 (259-405)||(10867042-10867188)
chr4 (295-404)||(13987990-13988099)
chr4 (316-413)||(22176914-22177011)
chr4 (319-398)||(18254013-18254092)
chr4 (330-392)||(35087429-35087491)
chr4 (347-404)||(8123187-8123244)
chr4 (347-404)||(19804318-19804375)
[»] scaffold0329 (1 HSPs)
scaffold0329 (316-413)||(11220-11317)
[»] scaffold0014 (1 HSPs)
scaffold0014 (295-404)||(95818-95927)
[»] scaffold0013 (1 HSPs)
scaffold0013 (295-404)||(248935-249044)
[»] scaffold0164 (1 HSPs)
scaffold0164 (319-398)||(27140-27219)
[»] scaffold1416 (1 HSPs)
scaffold1416 (302-413)||(1237-1348)


Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 18434634 - 18434168
Alignment:
Q  17 aattaccatatcaaaggagttttaataaagccatgaaaccttttgatctaattcactttgatatatggggtcctcttgctattaaatctgttcatggttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18434634 aattaccatatcaaaggagttttaataaagccatgaaaccttttgatctaattcactttgatatatggggtcctcttgctattaaatctgttcatggttt 18434535  T
Q  117 ttcttattttcttactgctgttgatgacttcagtagatatacttgggttactcttatgagatctaaggctgaagttagtcaacatgtcatgaattttgtc 216  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18434534 ttcttattttcttactgctgttgataacttcagtagatatacttgggttactcttatgagatctaaggctgaagttagtcaacatgtcatgaattttgtc 18434435  T
Q  217 cagctaattgaaacacaacataacacccttgttaaaaccataagaactgataatggcccagaatttttgatttcttctttctattcttccaaaggaatta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18434434 cagctaattgaaacacaacataacacccttgttaaaaccataagaactgataatggcccagaatttttgatttcttctttctattcttccaaaggaatta 18434335  T
Q  317 ttcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtttcattc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  18434334 ttcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagccagggatttgttgtttcattc 18434235  T
Q  417 aaatttaccaaaacaattttggtgttatgctgtgtcccatgctgtttttatcataaaccgtgtctct 483  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18434234 aaatttaccaaaacaattttggtgttatgctgtgtcacatgctgtttttatcataaaccgtgtctct 18434168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 37191911 - 37192018
Alignment:
Q  55 ccttttgatctaattcactttgatatatggggtcctcttgctattaaatctgttcatggtttttcttattttcttactgctgttgatgacttcagtagat 154  Q
    |||||||| ||||| || |||||||| ||||||||| || ||||||||||  | ||||||  |||||||||||| |||||||| ||||| |||||||| |    
T  37191911 ccttttgagctaatacattttgatatttggggtcctatttctattaaatccatacatggtcattcttattttctcactgctgtagatgatttcagtaggt 37192010  T
Q  155 atacttgg 162  Q
    ||||||||    
T  37192011 atacttgg 37192018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 404
Target Start/End: Complemental strand, 31195283 - 31195174
Alignment:
Q  295 ttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtag 394  Q
    ||||||||||| ||||| |||   |||||||  |||||||| ||  |||| ||||||||||| ||||||||||||||||||||||| ||  | |||||||    
T  31195283 ttctattcttctaaaggcattgagcatcaaacaagttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtag 31195184  T
Q  395 ctagggcttt 404  Q
    |||| |||||    
T  31195183 ctagagcttt 31195174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 52773030 - 52773139
Alignment:
Q  295 ttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtag 394  Q
    ||||||||||| ||||| |||   |||||||  |||||||| ||  |||| ||||||||||| ||||||||||||||||||||||| ||  | |||||||    
T  52773030 ttctattcttctaaaggcattgagcatcaaacaagttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtag 52773129  T
Q  395 ctagggcttt 404  Q
    |||| |||||    
T  52773130 ctagagcttt 52773139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 413
Target Start/End: Complemental strand, 19586786 - 19586683
Alignment:
Q  310 ggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgt 409  Q
    ||||| |||||||||||   |||||| ||| |||| ||||||||||| ||||||||||| ||||| ||||| || || ||||||| ||| ||||| || |    
T  19586786 ggaataattcatcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacacattctcaatgtaggtagagctttattat 19586687  T
Q  410 ttca 413  Q
    ||||    
T  19586686 ttca 19586683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 8836235 - 8836309
Alignment:
Q  330 ttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggcttt 404  Q
    |||||| ||| |||| ||||||||||| ||||| |||||||| ||||||||||| || ||||| ||||| |||||    
T  8836235 ttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgttgctagagcttt 8836309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 413
Target Start/End: Original strand, 12285511 - 12285608
Alignment:
Q  316 attcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtttca 413  Q
    |||||||||||   ||||||  || |||| ||||||||||| ||||||||||| ||||| |||||||| || ||||||| ||| ||||| || |||||    
T  12285511 attcatcaaaaatcttgtgttaaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttca 12285608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 380
Target Start/End: Original strand, 37192103 - 37192236
Alignment:
Q  247 gttaaaaccataagaactgataatggcccagaatttttgatttcttctttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccac 346  Q
    |||||||||||||||| ||||||||| || || ||| | ||  |   ||| || ||||| ||||||||| | |||||||  |||||||| ||| |||| |    
T  37192103 gttaaaaccataagaagtgataatggtcctgagtttctcatgccaaatttttactcttcaaaaggaattttacatcaaagaagttgtgtggaaactcctc 37192202  T
Q  347 aacaaaatggaagagtagaaagaaaacatcaaca 380  Q
    | |||||||  ||||| |||||||||||||||||    
T  37192203 agcaaaatgctagagttgaaagaaaacatcaaca 37192236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 53978153 - 53978232
Alignment:
Q  319 catcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctag 398  Q
    |||||||  |||||||| ||| |||| ||||||||||| ||||| ||||| || ||||||||||| || ||||| |||||    
T  53978153 catcaaactagttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgttgctag 53978232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 55310170 - 55310244
Alignment:
Q  330 ttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggcttt 404  Q
    |||||| ||| |||| ||||||||||| ||||| |||||||| |||||| |||| || ||||| ||||| |||||    
T  55310170 ttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaatatattcttaatgttgctagagcttt 55310244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Original strand, 30153396 - 30153861
Alignment:
Q  17 aattaccatatcaaaggagttttaataaagccatgaaaccttttgatctaattcactttgatatatggggtcctcttgctattaaatctgttcatggttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30153396 aattaccatatcaaaggagttttaataaagccatgaaaccttttgatctaattcactttgatatatggggtcctcttgctattaaatctgttcatggttt 30153495  T
Q  117 ttcttattttcttactgctgttgatgacttcagtagatatacttgggttactcttatgagatctaaggctgaagttagtcaacatgtcatgaattttgtc 216  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30153496 ttcttattttcttactgttgttgatgacttcagtagatatacttgggttactcttatgagatctaaggctgaagttagtcaacatgtcatgaattttgtc 30153595  T
Q  217 cagctaattgaaacacaacataacacccttgttaaaaccataagaactgataatggcccagaatttttgatttcttctttctattcttccaaaggaatta 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  30153596 cagctaattgaaacacaacataacacccttgttaaaaccataagaactgataatggcccataattttttatttcttc-ttctattcttccaaaggaatta 30153694  T
Q  317 ttcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtttcattc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30153695 ttcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagccagggctttgttgtttcattc 30153794  T
Q  417 aaatttaccaaaacaattttggtgttatgctgtgtcccatgctgtttttatcataaaccgtgtctct 483  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  30153795 aaatttaccaaaacaatttaggtgttatgctgtgtcacatgctgtttttatcataaaccgtgtctct 30153861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 23680882 - 23680985
Alignment:
Q  346 caacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtttcattcaaatttaccaaaacaattttggtgttatg 445  Q
    ||||||||||  ||||| |||||||||||||||||||| || ||||| || || ||||| |||||||| || ||  | ||||||||||||||||||||||    
T  23680882 caacaaaatgccagagttgaaagaaaacatcaacatatccttaatgtggcaagagctttattgtttcaatctaaacttccaaaacaattttggtgttatg 23680981  T
Q  446 ctgt 449  Q
    ||||    
T  23680982 ctgt 23680985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 413
Target Start/End: Complemental strand, 20483744 - 20483661
Alignment:
Q  330 ttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtttca 413  Q
    |||||||||| | ||  |||||||||  |||||||| |||||||||||||| || || ||||| ||||| ||||||||||||||    
T  20483744 ttgtgtagaaacacctgaacaaaatgctagagtagagagaaaacatcaacacattctcaatgttgctagagctttgttgtttca 20483661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 13130806 - 13130879
Alignment:
Q  331 tgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggcttt 404  Q
    ||||| ||| |||| ||||||||||| ||||| |||||||| ||||||||||| || ||||| ||||| |||||    
T  13130806 tgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatatccttaatgttgctagagcttt 13130879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 27689086 - 27689141
Alignment:
Q  346 caacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggc 401  Q
    |||||||||||||| || ||||||||||||| ||||||||| ||||| || |||||    
T  27689086 caacaaaatggaagggtggaaagaaaacatcgacatatactgaatgtggcaagggc 27689141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 426
Target Start/End: Complemental strand, 27036222 - 27036126
Alignment:
Q  330 ttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtttcattcaaatttacca 426  Q
    |||||| ||| |||| || |||||||| |||||||| ||||||||||| ||||| || ||||| |  || ||||| || ||||| ||||| ||||||    
T  27036222 ttgtgttgaaactccccagcaaaatgggagagtagagagaaaacatcagcatattctcaatgttggcagagctttattatttcaatcaaaattacca 27036126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 413
Target Start/End: Original strand, 28017412 - 28017523
Alignment:
Q  302 cttccaaaggaattattcatcaaaagag-ttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctaggg 400  Q
    |||| ||||| || |||||||||| ||| |||||||||| | ||  |||||||||  |||||||| |||||||| | ||| || || ||||| ||||| |    
T  28017412 cttcaaaaggcatcattcatcaaa-gagcttgtgtagaaacacctgaacaaaatgctagagtagagagaaaacaccgacacattctcaatgttgctagag 28017510  T
Q  401 ctttgttgtttca 413  Q
    |||||||||||||    
T  28017511 ctttgttgtttca 28017523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 37176524 - 37176572
Alignment:
Q  341 ctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaa 389  Q
    ||||||| || |||||||||||||| || | ||||||||||||||||||    
T  37176524 ctccacagcagaatggaagagtagagaggagacatcaacatatactaaa 37176572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 4e-70; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 6934280 - 6934477
Alignment:
Q  17 aattaccatatcaaaggagttttaataaagccatgaaaccttttgatctaattcactttgatatatggggtcctcttgctattaaatctgttcatggttt 116  Q
    ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| | |||    
T  6934280 aattaccttatcaaaggagtttgaataaagccttgaaaccttttgatctaattcactatgatatatgggatcctcttgctattaaatttgttcacgattt 6934379  T
Q  117 ttcttattttcttactgctgttgatgacttcagtagatatacttgggttactcttatgagatctaaggctgaagttagtcaacatgtcatgaattttgt 215  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| |  ||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  6934380 ttcttattttcttactgttgttgatgacttcagtaaatatacttgtgccactgttat-agatctaaggctgaagttagtcaacatgtcatgaattttgt 6934477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 2996337 - 2996444
Alignment:
Q  55 ccttttgatctaattcactttgatatatggggtcctcttgctattaaatctgttcatggtttttcttattttcttactgctgttgatgacttcagtagat 154  Q
    |||||||| ||||| ||  ||||||| ||||||||| || ||||||||||  | ||||||  |||||||||||| |||||||| ||||| |||||||| |    
T  2996337 ccttttgagctaatacatcttgatatttggggtcctatttctattaaatccatacatggtcattcttattttctcactgctgtagatgatttcagtaggt 2996436  T
Q  155 atacttgg 162  Q
    ||||||||    
T  2996437 atacttgg 2996444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 6934474 - 6934539
Alignment:
Q  245 ttgttaaaaccataagaactgataatggcccagaatttttgatttcttctttctattcttccaaag 310  Q
    |||||||| |||||| ||||||||||||||| |||||| ||||  |||||||||||||||||||||    
T  6934474 ttgttaaagccataaaaactgataatggcccggaatttctgatgccttctttctattcttccaaag 6934539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 249 - 402
Target Start/End: Original strand, 19991192 - 19991345
Alignment:
Q  249 taaaaccataagaactgataatggcccagaatttttgatttcttctttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaa 348  Q
    ||||| ||||||| ||||||||||||||||||||||| | |||  ||| ||| | ||  | || ||| ||||||||| |  |||||| ||  ||||  ||    
T  19991192 taaaatcataagatctgataatggcccagaatttttgttatctgatttttatgcctctcatggtattcttcatcaaaggtcttgtgttgagactcctgaa 19991291  T
Q  349 caaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggct 402  Q
    |||||||| | ||| ||||| || |||||||||||  ||||||| |||||||||    
T  19991292 caaaatggtatagttgaaaggaagcatcaacatatcttaaatgttgctagggct 19991345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 439
Target Start/End: Complemental strand, 44290071 - 44289935
Alignment:
Q  303 ttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggct 402  Q
    ||||||||| ||||||||||||||    ||||| || || || ||||||||||| ||||| |||||||| || |||||||| || ||||| |  || |||    
T  44290071 ttccaaaggcattattcatcaaaaatcctgtgttgagtcgcctcaacaaaatggcagagtggaaagaaagcaccaacatattcttaatgttgggagagct 44289972  T
Q  403 ttgttgtttcattcaaatttaccaaaacaattttggt 439  Q
     | || |||||||| || ||||||||| |||| ||||    
T  44289971 atcttatttcattccaaattaccaaaaaaattctggt 44289935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 2996583 - 2996662
Alignment:
Q  301 tcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaaca 380  Q
    ||||| ||||||||| | |||||||  |||||||| ||| |||| || |||||||  ||||| |||||||||||||||||    
T  2996583 tcttcaaaaggaattttacatcaaagaagttgtgtggaaactcctcagcaaaatgctagagttgaaagaaaacatcaaca 2996662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 15193135 - 15193214
Alignment:
Q  319 catcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctag 398  Q
    |||||||  |||||||| ||| |||| ||||||||||| ||||| ||||| || ||||||||||| || ||||| |||||    
T  15193135 catcaaactagttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgttgctag 15193214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 15757401 - 15757483
Alignment:
Q  316 attcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctag 398  Q
    |||||||||| |  |||||| ||| |||| ||||| ||||| |||||||| ||||| |||||||||||  ||||||| |||||    
T  15757401 attcatcaaaggtcttgtgttgaaactcctcaacataatggtagagtagagagaaagcatcaacatattttaaatgttgctag 15757483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 431
Target Start/End: Original strand, 17386835 - 17386976
Alignment:
Q  290 cttctttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaa 389  Q
    |||||||||||   || ||||||||| | |||||||  |||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||  | ||    
T  17386835 cttctttctatcaatcaaaaggaattttgcatcaaactagttgtgtggaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaa 17386934  T
Q  390 tgtagctagggctttgttgtttcattcaaatttaccaaaaca 431  Q
    |||||  || || || ||  |||| |||||||||||||||||    
T  17386935 tgtaggaagagcattattaattcaatcaaatttaccaaaaca 17386976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 413
Target Start/End: Complemental strand, 16990937 - 16990826
Alignment:
Q  302 cttccaaaggaattattcatcaaaagag-ttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctaggg 400  Q
    |||| ||||| || |||||||||| ||| |||||||||| | ||  |||||||||  |||||||| |||||||||||||| || || ||||| ||||| |    
T  16990937 cttcaaaaggcatcattcatcaaa-gagcttgtgtagaaacacctgaacaaaatgctagagtagagagaaaacatcaacacattctcaatgttgctagag 16990839  T
Q  401 ctttgttgtttca 413  Q
    |||||||||||||    
T  16990838 ctttgttgtttca 16990826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 26472138 - 26472212
Alignment:
Q  330 ttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggcttt 404  Q
    |||||| ||| |||| ||||||||||| ||||| |||||||| ||||||||||| || ||||| ||||| |||||    
T  26472138 ttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaacatattcttaatgttgctagagcttt 26472212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 20324126 - 20324056
Alignment:
Q  313 attattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatat 383  Q
    ||||||||||||||   |||||| ||| |||| ||||||||||| ||||| || || ||||||||||||||    
T  20324126 attattcatcaaaaatcttgtgttgaaactcctcaacaaaatggtagagttgagaggaaacatcaacatat 20324056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 307 - 439
Target Start/End: Original strand, 15537121 - 15537253
Alignment:
Q  307 aaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgt 406  Q
    ||||||||| | |||||||  |||||||| ||||||||  ||||||||||||| ||||| |||||||||||||||||  | |||||||  || || || |    
T  15537121 aaaggaattttgcatcaaactagttgtgtggaatctcccaaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattat 15537220  T
Q  407 tgtttcattcaaatttaccaaaacaattttggt 439  Q
    |  |||| ||||||||||||||||| |||||||    
T  15537221 taattcaatcaaatttaccaaaacatttttggt 15537253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 16256520 - 16256629
Alignment:
Q  295 ttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtag 394  Q
    ||||||||||| ||||| |||   |||||||  |||||||| ||  |||| ||||||||||| ||||||||||||||||||||||| ||  | |||||||    
T  16256520 ttctattcttctaaaggcattgagcatcaaacaagttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtag 16256619  T
Q  395 ctagggcttt 404  Q
    |||| |||||    
T  16256620 ctagagcttt 16256629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 13711528 - 13711583
Alignment:
Q  346 caacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggc 401  Q
    |||||||||||||| || ||||||||||||| ||||||||| ||||| || |||||    
T  13711528 caacaaaatggaagggtggaaagaaaacatcgacatatactgaatgtggcaagggc 13711583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 34823632 - 34823739
Alignment:
Q  55 ccttttgatctaattcactttgatatatggggtcctcttgctattaaatctgttcatggtttttcttattttcttactgctgttgatgacttcagtagat 154  Q
    |||||||| ||||| || |||||||| ||||||||| || ||||||||||  | ||||||  |||||||||||| |||||||| ||||| |||||||| |    
T  34823632 ccttttgagctaatacattttgatatttggggtcctatttctattaaatccatacatggtcattcttattttctcactgctgtagatgatttcagtaggt 34823731  T
Q  155 atacttgg 162  Q
    ||||||||    
T  34823732 atacttgg 34823739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 26133443 - 26133552
Alignment:
Q  295 ttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtag 394  Q
    ||||||||||| ||||| |||   |||||||  |||||||| ||  |||| ||||||||||| ||||||||||||||||||||||| ||  | |||||||    
T  26133443 ttctattcttctaaaggcattgagcatcaaacaagttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtag 26133542  T
Q  395 ctagggcttt 404  Q
    |||| |||||    
T  26133543 ctagagcttt 26133552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 405
Target Start/End: Original strand, 14814958 - 14815104
Alignment:
Q  259 agaactgataatggcccagaatttttgatttcttctttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaa 358  Q
    ||||||||||||||||| |||||  || |  ||||||| ||| ||||  | || |||||||| || ||   |||||||||| |||| ||||||||||| |    
T  14814958 agaactgataatggccctgaattcatgttaccttctttttatgcttcacatggcattattcaccagaaatcttgtgtagaaactccccaacaaaatggta 14815057  T
Q  359 gagtagaaagaaaacatcaacatatactaaatgtagctagggctttg 405  Q
    |||| ||||||||||||||||| ||  ||||||| | ||| ||||||    
T  14815058 gagttgaaagaaaacatcaacacattttaaatgttggtagagctttg 14815104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 383
Target Start/End: Complemental strand, 20699329 - 20699259
Alignment:
Q  313 attattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatat 383  Q
    |||||||| ||||||  |||||||||| |||| ||||||||| |  |||||||||||||||| ||||||||    
T  20699329 attattcaccaaaagtcttgtgtagaaactccccaacaaaattgttgagtagaaagaaaacaccaacatat 20699259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 28939108 - 28939049
Alignment:
Q  313 attattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaa 372  Q
    ||||||||||||| |  |||||||||| |||| || |||||||| |||||||||||||||    
T  28939108 attattcatcaaaggtcttgtgtagaaactccccagcaaaatggtagagtagaaagaaaa 28939049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 31401798 - 31401853
Alignment:
Q  346 caacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggc 401  Q
    |||||||||||||| || ||||||||||||| ||||||||| ||||| || |||||    
T  31401798 caacaaaatggaagggtggaaagaaaacatcgacatatactgaatgtggcaagggc 31401853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 34823878 - 34823957
Alignment:
Q  301 tcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaaca 380  Q
    ||||| ||||||||| | |||||||  |||||||| ||| |||| || |||||||  ||||| |||||||||||||||||    
T  34823878 tcttcaaaaggaattttacatcaaagaagttgtgtggaaactcctcagcaaaatgctagagttgaaagaaaacatcaaca 34823957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 393
Target Start/End: Original strand, 12301015 - 12301077
Alignment:
Q  331 tgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgta 393  Q
    ||||| ||| |||| ||||| ||||| ||| |||||||||||||||||||||| || ||||||    
T  12301015 tgtgttgaaactccccaacagaatggtagaatagaaagaaaacatcaacatattctcaatgta 12301077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 413
Target Start/End: Original strand, 6342383 - 6342494
Alignment:
Q  302 cttccaaaggaattattcatcaaaagag-ttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctaggg 400  Q
    |||| ||||| || |||||||||| ||| |||||||||| | ||  |||||||||  |||||||| |||||||| | ||| || || ||||| ||||| |    
T  6342383 cttcaaaaggcatcattcatcaaa-gagcttgtgtagaaacacctgaacaaaatgctagagtagagagaaaacaccgacacattctcaatgttgctagag 6342481  T
Q  401 ctttgttgtttca 413  Q
    |||||||||||||    
T  6342482 ctttgttgtttca 6342494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 6569652 - 6569604
Alignment:
Q  346 caacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtag 394  Q
    ||||||||||| |||||||| |||||||||||| |||| || |||||||    
T  6569652 caacaaaatgggagagtagagagaaaacatcaatatattctcaatgtag 6569604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 449
Target Start/End: Complemental strand, 37738860 - 37738757
Alignment:
Q  346 caacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtttcattcaaatttaccaaaacaattttggtgttatg 445  Q
    ||||||||||  ||||| ||||||||||| |||||||| || ||||| || || ||||| |||||||| || ||  | ||||||||||||||||||||||    
T  37738860 caacaaaatgccagagttgaaagaaaacaccaacatatccttaatgtggcaagagctttattgtttcaatctaaacttccaaaacaattttggtgttatg 37738761  T
Q  446 ctgt 449  Q
    ||||    
T  37738760 ctgt 37738757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 405
Target Start/End: Original strand, 2359717 - 2359863
Alignment:
Q  259 agaactgataatggcccagaatttttgatttcttctttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaa 358  Q
    ||||||||||||||||| |||||  || |  ||||||| ||| ||||  | || |||||||| || ||   |||||||||| |||| ||||||||||| |    
T  2359717 agaactgataatggccctgaattcatgttaccttctttttatgcttcacatggcattattcaccagaaatcttgtgtagaaactccccaacaaaatggta 2359816  T
Q  359 gagtagaaagaaaacatcaacatatactaaatgtagctagggctttg 405  Q
    |||| ||||||||||||||||| ||  ||||||| | ||| ||||||    
T  2359817 gagttgaaagaaaacatcaacacattttaaatgttggtagagctttg 2359863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 331 - 449
Target Start/End: Original strand, 6530897 - 6531015
Alignment:
Q  331 tgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtttcattcaaatttaccaaaac 430  Q
    ||||| ||| |||| ||||||||||| || ||  |||||||||||||||||||| ||||||| ||||| ||| | |||||||| || ||  | || ||||    
T  6530897 tgtgttgaaactccccaacaaaatggtagggttaaaagaaaacatcaacatatattaaatgttgctagagctctattgtttcagtctaaacttcctaaac 6530996  T
Q  431 aattttggtgttatgctgt 449  Q
    | ||||||| |||||||||    
T  6530997 atttttggtcttatgctgt 6531015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 413
Target Start/End: Original strand, 52777891 - 52777988
Alignment:
Q  316 attcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtttca 413  Q
    |||||||||||   |||||| ||| |||| ||||||||||| ||||||||||| ||||| |||||||| || ||||||| ||| ||||| || |||||    
T  52777891 attcatcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttca 52777988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 410
Target Start/End: Complemental strand, 32612538 - 32612441
Alignment:
Q  313 attattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtt 410  Q
    |||||||||||||||   ||||| ||| |||| ||||||||||| ||||| || || |||||||| ||||| || ||||| | ||||||||| |||||    
T  32612538 attattcatcaaaagtcatgtgttgaaactcctcaacaaaatggcagagttgagaggaaacatcagcatattcttaatgttggtagggctttattgtt 32612441  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 49641146 - 49641067
Alignment:
Q  319 catcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctag 398  Q
    |||||||  |||||||| ||| |||| ||||||||||| ||||| ||||| || ||||||||||| || ||||| |||||    
T  49641146 catcaaactagttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgttgctag 49641067  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 419
Target Start/End: Complemental strand, 9797198 - 9797098
Alignment:
Q  319 catcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtttcattcaa 418  Q
    |||||||  |||||||| ||| | || ||||||||||| || ||||||||||| |  |||||||| ||||||||||  || || || |||||||| ||||    
T  9797198 catcaaactagttgtgttgaaaccccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttattgtttcagtcaa 9797099  T
Q  419 a 419  Q
    |    
T  9797098 a 9797098  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 9797446 - 9797402
Alignment:
Q  71 actttgatatatggggtcctcttgctattaaatctgttcatggtt 115  Q
    |||||||||| |||||||||||| ||||| ||||| |||||||||    
T  9797446 actttgatatttggggtcctctttctattcaatctattcatggtt 9797402  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 405
Target Start/End: Original strand, 5239500 - 5239646
Alignment:
Q  259 agaactgataatggcccagaatttttgatttcttctttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaa 358  Q
    ||||||||||||||||| |||||  || |  ||||||| ||| ||||  | || |||||||| || ||   |||||||||| |||| ||||||||||| |    
T  5239500 agaactgataatggccctgaattcatgttaccttctttttatgcttcacatggcattattcaccagaaatcttgtgtagaaactccccaacaaaatggta 5239599  T
Q  359 gagtagaaagaaaacatcaacatatactaaatgtagctagggctttg 405  Q
    |||| ||||||||||||||||| ||  ||||||| | ||| ||||||    
T  5239600 gagttgaaagaaaacatcaacacattttaaatgttggtagagctttg 5239646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 405
Target Start/End: Original strand, 10652897 - 10653043
Alignment:
Q  259 agaactgataatggcccagaatttttgatttcttctttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaa 358  Q
    ||||||||||||||||| |||||  || |  ||||||| ||| ||||  | || |||||||| || ||   |||||||||| |||| ||||||||||| |    
T  10652897 agaactgataatggccctgaattcatgttaccttctttttatgcttcacatggcattattcaccagaaatcttgtgtagaaactccccaacaaaatggta 10652996  T
Q  359 gagtagaaagaaaacatcaacatatactaaatgtagctagggctttg 405  Q
    |||| ||||||||||||||||| ||  ||||||| | ||| ||||||    
T  10652997 gagttgaaagaaaacatcaacacattttaaatgttggtagagctttg 10653043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 405
Target Start/End: Original strand, 10867042 - 10867188
Alignment:
Q  259 agaactgataatggcccagaatttttgatttcttctttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaa 358  Q
    ||||||||||||||||| |||||  || |  ||||||| ||| ||||  | || |||||||| || ||   |||||||||| |||| ||||||||||| |    
T  10867042 agaactgataatggccctgaattcatgttaccttctttttatgcttcacatggcattattcaccagaaatcttgtgtagaaactccccaacaaaatggta 10867141  T
Q  359 gagtagaaagaaaacatcaacatatactaaatgtagctagggctttg 405  Q
    |||| ||||||||||||||||| ||  ||||||| | ||| ||||||    
T  10867142 gagttgaaagaaaacatcaacacattttaaatgttggtagagctttg 10867188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 13987990 - 13988099
Alignment:
Q  295 ttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtag 394  Q
    ||||||||||| ||||| |||   |||||||  |||| ||| ||  |||| ||||||||||| ||||||||||||||||||||||| ||  | |||||||    
T  13987990 ttctattcttctaaaggcattgagcatcaaacaagttatgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtag 13988089  T
Q  395 ctagggcttt 404  Q
    |||| |||||    
T  13988090 ctagagcttt 13988099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 22177011 - 22176914
Alignment:
Q  316 attcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtttca 413  Q
    |||||||||||   |||||| ||| |||| ||||||||||| ||||||||||| ||||| |||||||| || ||||||| ||| ||||| || |||||    
T  22177011 attcatcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttca 22176914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 18254013 - 18254092
Alignment:
Q  319 catcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctag 398  Q
    |||||||  |||||||| ||| |||| ||||||||||| ||||| ||||| || ||||||||||| || ||||| |||||    
T  18254013 catcaaactagttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgttgctag 18254092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 392
Target Start/End: Original strand, 35087429 - 35087491
Alignment:
Q  330 ttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgt 392  Q
    |||||| ||| |||| || |||||||| |||||||| ||||||||||||||||| || |||||    
T  35087429 ttgtgttgaaactccccagcaaaatgggagagtagagagaaaacatcaacatattctcaatgt 35087491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 8123244 - 8123187
Alignment:
Q  347 aacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggcttt 404  Q
    |||||||||| ||||| |||||||| ||||||||||| || ||| | |||||||||||    
T  8123244 aacaaaatggtagagtggaaagaaagcatcaacatatcctcaattttgctagggcttt 8123187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 19804375 - 19804318
Alignment:
Q  347 aacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggcttt 404  Q
    |||||||||| ||||| |||||||| ||||||||||| || ||||| | |||||||||    
T  19804375 aacaaaatggtagagtggaaagaaagcatcaacatatcctcaatgttgttagggcttt 19804318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 413
Target Start/End: Original strand, 11220 - 11317
Alignment:
Q  316 attcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctagggctttgttgtttca 413  Q
    |||||||||||   |||||| ||| |||| ||||||||||| ||||||||||| ||||| |||||||| || ||||||| ||| ||||| || |||||    
T  11220 attcatcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttca 11317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 404
Target Start/End: Complemental strand, 95927 - 95818
Alignment:
Q  295 ttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtag 394  Q
    ||||||||||| ||||| |||   |||||||  |||| ||| ||  |||| ||||||||||| ||||||||||||||||||||||| ||  | |||||||    
T  95927 ttctattcttctaaaggcattgagcatcaaacaagttatgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtag 95828  T
Q  395 ctagggcttt 404  Q
    |||| |||||    
T  95827 ctagagcttt 95818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 404
Target Start/End: Complemental strand, 249044 - 248935
Alignment:
Q  295 ttctattcttccaaaggaattattcatcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtag 394  Q
    ||||||||||| ||||| |||   ||| |||  |||||||| ||  |||| ||||||||||| ||||||||||||||||||||||| ||  | |||||||    
T  249044 ttctattcttctaaaggcattgagcattaaacaagttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtag 248945  T
Q  395 ctagggcttt 404  Q
    |||| |||||    
T  248944 ctagagcttt 248935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 27219 - 27140
Alignment:
Q  319 catcaaaagagttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctag 398  Q
    |||||||  |||||||| ||| |||| ||||||||||| ||||| ||||| || ||||||||||| || ||||| |||||    
T  27219 catcaaactagttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaacatattcttaatgttgctag 27140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1416 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 413
Target Start/End: Complemental strand, 1348 - 1237
Alignment:
Q  302 cttccaaaggaattattcatcaaaagag-ttgtgtagaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagctaggg 400  Q
    |||| ||||| || |||||||||| ||| |||||||||| | ||  |||||||||  |||||||| |||||||| | ||| || || ||||| ||||| |    
T  1348 cttcaaaaggcatcattcatcaaa-gagcttgtgtagaaacacctgaacaaaatgctagagtagagagaaaacacctacacattctcaatgttgctagag 1250  T
Q  401 ctttgttgtttca 413  Q
    |||||||||||||    
T  1249 ctttgttgtttca 1237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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