View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4906_high_7 (Length: 217)
Name: NF4906_high_7
Description: NF4906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4906_high_7 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0061 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 13550694 - 13550862
Alignment:
| Q |
42 |
tgaaactaaaatacgaagaactccgcttcaatgtcaatcgttattcgttgtagttgtagttgttgggagcaaagcatctgttacacatttgaaaattgca |
141 |
Q |
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| T |
13550694 |
tgaaactaaaatacgaagaactccgcttcaatgtcaatcgttattc-------ttgtagttgttgggagcaaagcatctgttacacatttgaaaattgca |
13550786 |
T |
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| Q |
142 |
ataatcaaattaaattatgtaaaaacaccttcaattcagatcctaattctctcaaagcatgcatgttatgctctac |
217 |
Q |
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| T |
13550787 |
ataatcaaattaaatcatgtaaaaacaccttcaattcagatcctaattctctcaaagcatgcatgttatgctctac |
13550862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 13550398 - 13550433
Alignment:
| Q |
1 |
aatcctcaattctcattagcaattttccaatagaaa |
36 |
Q |
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| T |
13550398 |
aatcctcaattctcattagcaattttccaatagaaa |
13550433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 346 - 511
Alignment:
| Q |
42 |
tgaaactaaaatacgaagaactccgcttcaatgtcaatcgttattcgttgtagttgtagttgttgggagcaaagcatctgttacacatttgaaaattgca |
141 |
Q |
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| T |
346 |
tgaaactaaaatacaaagaactctacttggatgtcaatagttattcgttgtagttgt------tgggagcaa-gcatacgtttcacatttgaaaattgca |
438 |
T |
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| Q |
142 |
ataatcaaattaaattatgtaaaaacaccttcaattcagatcctaattctctcaaagcatgcatgttatgctctac |
217 |
Q |
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| T |
439 |
ataatcaaattaaatctagtcaaaacaccttatattcaaatcctaattctctcaaagc---catgttatgctctac |
511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 5857 - 6022
Alignment:
| Q |
42 |
tgaaactaaaatacgaagaactccgcttcaatgtcaatcgttattcgttgtagttgtagttgttgggagcaaagcatctgttacacatttgaaaattgca |
141 |
Q |
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| T |
5857 |
tgaaactaaaatacaaagaactctacttggatgtcaatagttattcgttgtagttgt------tgggagcaa-gcatacgtttcacatttgaaaattgca |
5949 |
T |
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| Q |
142 |
ataatcaaattaaattatgtaaaaacaccttcaattcagatcctaattctctcaaagcatgcatgttatgctctac |
217 |
Q |
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| T |
5950 |
ataatcaaattaaatctagtcaaaacaccttatattcaaatcctaattctctcaaagc---catgttatgctctac |
6022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 27273488 - 27273607
Alignment:
| Q |
94 |
gttgtagttgttgggagcaaagcatctgttacacatttgaaaattgcaataatcaaattaaattatgtaaaaacaccttcaattcagatcctaattctct |
193 |
Q |
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|||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| || |||||||||| |||||| ||||||||||||| |
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| T |
27273488 |
gttgtagttgttgggagcaa-gcatacgttacacatttgagaattgcaataatcaaattaaatctagtcaaaacaccttgaattcaaatcctaattctct |
27273586 |
T |
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| Q |
194 |
caaagcatgcatgttatgctctac |
217 |
Q |
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| T |
27273587 |
caaagc---catgttatgctctac |
27273607 |
T |
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