View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4906_low_1 (Length: 755)
Name: NF4906_low_1
Description: NF4906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4906_low_1 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 152 - 755
Target Start/End: Original strand, 24313157 - 24313760
Alignment:
| Q |
152 |
taacttcacacgtatcataataataaattaattgttgaattatttatttatttttacacgaatgactatttaacatgttgcatgtattacagattcaaag |
251 |
Q |
| |
|
|||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24313157 |
taacttcacacgaatcatagtaattaattaattgttgaattatttatttatttttacacgaatgactatttaacatattgcatgtattacagattcaaag |
24313256 |
T |
|
| Q |
252 |
tcaagggacttggtgccagaactggacttgctgcgattcaaagatctaccccttttcaatttgaaaaatcaacatgattttctacaaagcatagctaaaa |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
24313257 |
tcaagggacttggtgccagaactggacttgctgcgattcaaagatctacccctttttaatttgacaaatcaatatgattttttacaaagcataggtaaaa |
24313356 |
T |
|
| Q |
352 |
cactttcaataacacctttgggtgttatattcaacaccgtggaaagcttagaagattcatcactaaatcaactccaaaagctatacaaagttaacctctt |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24313357 |
cactttcaataacacctttgggtgttatattcaacaccgtggaaagcttagaagattcatcactaaatcaactccaaaagctatacaaagctaacctctt |
24313456 |
T |
|
| Q |
452 |
ccccataggtcctctacacatgattgccaatgatgccagcaatactaatagcattctgcaagaaaatgataattgcatatcttggctaa---acaacaaa |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24313457 |
ccccataggtcctctacacatgattgccaatgatgctaacaa---tagtagcattctgcaagaaaatgataattgcatatcttggctaaattacaacaaa |
24313553 |
T |
|
| Q |
549 |
gcaagaaaatctgtgttatatgtaagtttgggaagcatagctagttgggaagaaagagagctaactgaagttgcttgtggcttagtcaacagcagacaaa |
648 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24313554 |
ccaagaaagtctgtgttatatgtaagtttgggaagcatagctagttgggaagagaaagagctaactgaagttgcttgtggcttagtcaacagcagacaaa |
24313653 |
T |
|
| Q |
649 |
atttcctttgggttattcgacccgagtcaatcaacgatgtttcagcatggttagaatctttgccggaagatgttaaagtaggtgtagcagagagaggctg |
748 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24313654 |
atttcctttgggttattcgacctgagtcaatcagcgatgtttcagcgtggttagaatccttgccggaagatgttaaagtaggtgtggcagagagaggctg |
24313753 |
T |
|
| Q |
749 |
tgttgtg |
755 |
Q |
| |
|
||||||| |
|
|
| T |
24313754 |
tgttgtg |
24313760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 24312939 - 24313028
Alignment:
| Q |
57 |
cctcccgaaagattcctcatgtttaattagcttgaagtggcttttttctgttcacattcacgctcaagaaaatgatatcataaccataaa |
146 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24312939 |
cctcccgaaagattcctcatgtttaatgaccttgaagtagcttttttctgttcacattcacgctcaagaaaatgataccataaccataaa |
24313028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University