View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4906_low_4 (Length: 292)
Name: NF4906_low_4
Description: NF4906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4906_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 4841807 - 4841547
Alignment:
| Q |
21 |
tctccctccaattactatcccagnnnnnnnncttcccaattatactccattcgtaaggggtttaccacatggattaccacctgtattaccacatataata |
120 |
Q |
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| T |
4841807 |
tctccctccaattactatcccagaacaaaaatttaccaatttgactccattcgtaaggggtttaccacatggattaccacctgtattaccacatataaga |
4841708 |
T |
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| Q |
121 |
caacattcccctccacct------ttctgaaacatcaatgcgacaaggcataccaatatcaactaagtaattgtttttgcttgatttggttaaggttttt |
214 |
Q |
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| T |
4841707 |
caacattcccctccacctagacatttctgaaacatcaatgcgacaaggcataccaatatcaactaagcaattgtttttgcttgatttggttaaggttttt |
4841608 |
T |
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| Q |
215 |
ctgctgtgattctattgtatatattaagggttgtttaggtggtttgtgctgtggctttttggcct |
279 |
Q |
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| T |
4841607 |
ctgctgtgattctattg----tattaagggttgtttaggtggtttgtgttgtgcctttttggcct |
4841547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 138 - 279
Target Start/End: Complemental strand, 4834972 - 4834829
Alignment:
| Q |
138 |
tttctgaaacatcaatgcgacaaggcataccaatatcaactaagtaattgtt-----tttgcttgatttggttaaggtttttctgctgtgattctattgt |
232 |
Q |
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| T |
4834972 |
tttctgaaacatcaacgcgacaaggcatacaaatatcaactaagtaattgtttttaatttgcttgatttggttaaggtttttctgctgtgattctattg- |
4834874 |
T |
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| Q |
233 |
atatattaagggttgtttaggtgg-tttgtgctgtggctttttggcct |
279 |
Q |
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| T |
4834873 |
---tattaagggttgtttgggtggttttgtgttgtggctttttggcct |
4834829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 4871241 - 4871176
Alignment:
| Q |
190 |
tttgcttgatttggttaaggtttttctgctgtgattctattgtatatattaagggttgtttaggtggttt |
259 |
Q |
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| T |
4871241 |
tttgcttgatttggttaaggtttttctgctgtgattatattg----tattaagggttgtttgggtggttt |
4871176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 4826246 - 4826193
Alignment:
| Q |
138 |
tttctgaaacatcaatgcgacaaggcataccaatatcaactaagtaattgtttt |
191 |
Q |
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| T |
4826246 |
tttctgaaacatcaatgcaacaagacatatcaatatctactaagtaattgtttt |
4826193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 4845651 - 4845601
Alignment:
| Q |
138 |
tttctgaaacatcaatgcgacaaggcataccaatatcaactaagtaattgt |
188 |
Q |
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| T |
4845651 |
tttctgaaacatcaatgcaacaagacatatcaatatctactaagtaattgt |
4845601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 4871410 - 4871360
Alignment:
| Q |
138 |
tttctgaaacatcaatgcgacaaggcataccaatatcaactaagtaattgt |
188 |
Q |
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| T |
4871410 |
tttctgaaacatcaatgcaacaagacatatcaatatctactaagtaattgt |
4871360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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