View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4906_low_8 (Length: 203)
Name: NF4906_low_8
Description: NF4906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4906_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 3e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 5396001 - 5395833
Alignment:
| Q |
17 |
aatattaatataataaaaacgagaatgtcatggccttatggcactcactgtctcaagcaatacagattttaatagcatgtcacctataatacacaaacat |
116 |
Q |
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| T |
5396001 |
aatattaatataataaaaacgagaatgtcatggccttatggcactcactgtctcaagcaatacagcttttaatagcatgtcacctatactacacaaacat |
5395902 |
T |
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| Q |
117 |
catgattcaacatcacattatctttgaaaag-nnnnnnnnntgaactggtggttagctaaagcatctgg |
184 |
Q |
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| T |
5395901 |
catgattcaacatcacattatctttgaaaagaaaaaaaaaatgaactggtggttagctaaagcatctgg |
5395833 |
T |
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