View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4907-Insertion-1 (Length: 871)
Name: NF4907-Insertion-1
Description: NF4907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4907-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 759; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 7 - 868
Target Start/End: Original strand, 32146738 - 32147602
Alignment:
| Q |
7 |
agaaaatagtgttatataatttcctcatgcttggaaccttcattggcctcaagcaaatgctcaggtaagaagaattaggaacaagcagacatcaagatca |
106 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32146738 |
agaaaatagtgttatataatttccccatgcttggacccttcattggcctcaagcaaatgctcaggtaagaagaattaggaacaagcagacatcaagatca |
32146837 |
T |
|
| Q |
107 |
aagaagagaacatcaagtacatgaaaaagtattaggcaaggttaaaaccaaggtatcaccatccttggttccaagttataaaatcttatcaattgttttg |
206 |
Q |
| |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
32146838 |
aataacagaacatcaagtacatgaaaaagtattaggcaaggttaaaaccaaggtatcaccaaccttggttccaagttataaaatctcatcaattgttttg |
32146937 |
T |
|
| Q |
207 |
aaccagacatttctgcacaaaaagtattagtgcaaagtgc---catgtccaaatgacgatcgaaattgtagcattacttgtgtaaatttgaggtatccta |
303 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
32146938 |
aaccagacatttcttcacaaaaagtattagtgcaaagtgctgccatgtccaaatgacgatcgaaattgtagtatcacttgtgtaaatttgaggtatccta |
32147037 |
T |
|
| Q |
304 |
agggtgtgtattgtggttggtctggtttgtgttgttgcgagggataattgttccttctcaaaatgttgtatcaagtttatctacactgattctttatgat |
403 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
32147038 |
agggtgtgtattgcggttggtctggtctgtgttgttgcgagggataattgttccttctcaaaatgttgtatcaagtttatctacacagagtctttatgat |
32147137 |
T |
|
| Q |
404 |
tagtggaaaaataaataaataggtttctattttatcatatgttttgaaccaaaaatttcttcacaaaaaagtatagtccaaagagcaactaatgctggga |
503 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32147138 |
tagtggagaaataaataaattggtttctattttatcatatgttttgaaccaaaaatttcttcacaaaaaagtatagtccaaagagcaactaatgctggga |
32147237 |
T |
|
| Q |
504 |
ctactactcttagaagaaaaacatcaagcaaaactgacattatttgcatttgtaaggtattctttataatgatctcagcaattttgtagcaacactttat |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32147238 |
ctactactcttagaagaaaaacatcaagcaaaactgaaattatttgcatttgtaaggtattctttataatgatctcagcaattttgtagcaacactttat |
32147337 |
T |
|
| Q |
604 |
cagtcattgttaacatgaacagagaatgatgctcaccttgtaatttttgtgacaataaaaataataacaaagaacttaatatattatacttgaaatatcc |
703 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32147338 |
cagtcattgttaacatgaacagagaatgatgctcaccttgtaatttttgtgacaataaaaataattacaaagaacttaatatattatacttgaaatatcc |
32147437 |
T |
|
| Q |
704 |
caattttaagtttgatacgaaactagagacccaacacacaataatcatacgtcttaagatgcctataaaaggatatagagtatctaaagaacttaactta |
803 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32147438 |
caattgtaagtttgatacgaaaatagagacccaactcacgataatcataagtcttaagatgcctataaaaggatatagagtatctaaagagcttaactta |
32147537 |
T |
|
| Q |
804 |
ttgtttctagtacataaccaaacatggcctatatattttctctacctagttcaccttcttctttg |
868 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32147538 |
ttgtttctagtacataaccaaacatggcctatatattttctctacctagttcaccttcttctttg |
32147602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 693 - 869
Target Start/End: Original strand, 32156256 - 32156432
Alignment:
| Q |
693 |
ttgaaatatcccaattttaagtttgatacgaaactagagacccaacacacaataatcatacgtcttaagatgcctataaaaggatatagagtatctaaag |
792 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | || ||||||| || ||||| || |||| ||||||||||||||||||||||||||||||||| |
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| T |
32156256 |
ttgaaatatcccaattgtaagtttgatacgaaagtggacacccaactcaagataattttaagtctaaagatgcctataaaaggatatagagtatctaaat |
32156355 |
T |
|
| Q |
793 |
aacttaacttattgtttctagtacataaccaaacatggcctatatattttctctacctagttcaccttcttctttga |
869 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| |
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|
| T |
32156356 |
agcttaacttattgtttctagtacataaccaaacatggcctatatattttcactccctagttcagattcttctttga |
32156432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 32155693 - 32155879
Alignment:
| Q |
7 |
agaaaatagtgttatataatttcctcatgcttggaaccttcattggcctcaagcaaatgctcaggtaagaagaattaggaacaag----cagacatcaag |
102 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||| |||| ||||| ||||||||||||||||| || ||||||| |
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|
| T |
32155693 |
agaaaatagtgttataaaatttccccatgcttggacccttcattggccttgagcaattgcttaggtaggaagaattaggaacaagtggacatgcatcaag |
32155792 |
T |
|
| Q |
103 |
atcaaagaagagaacatcaagtacatgaaaa----agtattaggcaagg-ttaaaaccaaggtatcaccatccttggttccaagtta |
184 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |||||||||||||| |
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|
| T |
32155793 |
gtcaaagagcagaacatcaagtacatgaaaaagtgagtattaggcaaggaaaaaaaccaaggtatcaccaactttggttccaagtta |
32155879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 763 - 871
Target Start/End: Complemental strand, 2821556 - 2821448
Alignment:
| Q |
763 |
tgcctataaaaggatatagagtatctaaagaacttaacttattgtttctagtacataaccaaacatggcctatatattttctctacctagttcaccttct |
862 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
2821556 |
tgcctataaaaggatatagaatatctaattagcttagcttattatttctagtacataaccaaacatggcctatatattttctctacctagttcagattct |
2821457 |
T |
|
| Q |
863 |
tctttgata |
871 |
Q |
| |
|
|||| |||| |
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|
| T |
2821456 |
tcttggata |
2821448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 811 - 871
Target Start/End: Original strand, 32534143 - 32534203
Alignment:
| Q |
811 |
tagtacataaccaaacatggcctatatattttctctacctagttcaccttcttctttgata |
871 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
32534143 |
tagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctttgata |
32534203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 812 - 867
Target Start/End: Original strand, 32174151 - 32174206
Alignment:
| Q |
812 |
agtacataaccaaacatggcctatatattttctctacctagttcaccttcttcttt |
867 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32174151 |
agtacagaaccaaacatgacctatatattttctctacctagttcaccttcttcttt |
32174206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 813 - 871
Target Start/End: Original strand, 32182181 - 32182239
Alignment:
| Q |
813 |
gtacataaccaaacatggcctatatattttctctacctagttcaccttcttctttgata |
871 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32182181 |
gtacataaccaaacataacctatatattttcactacctagttcaccttcttctttgata |
32182239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 821 - 871
Target Start/End: Original strand, 32118463 - 32118513
Alignment:
| Q |
821 |
ccaaacatggcctatatattttctctacctagttcaccttcttctttgata |
871 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
32118463 |
ccaaacatgacctatatattttctctatctagttcatgttcttctttgata |
32118513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 29371398 - 29371459
Alignment:
| Q |
356 |
ccttctcaaaatgttgtatcaagtttatctacactgattctttatgattagtggaaaaataa |
417 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || ||||||||| ||||| |||||||| |
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|
| T |
29371398 |
ccttctcaaaatgttggtacaagtttatctacacggagtctttatgactagtgtaaaaataa |
29371459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 818 - 871
Target Start/End: Original strand, 32152313 - 32152366
Alignment:
| Q |
818 |
taaccaaacatggcctatatattttctctacctagttcaccttcttctttgata |
871 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| |||| |||||||| |
|
|
| T |
32152313 |
taaccaaacatagcctatatattttctctacatagttcatgttctcctttgata |
32152366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 495 - 535
Target Start/End: Original strand, 32118101 - 32118141
Alignment:
| Q |
495 |
atgctgggactactactcttagaagaaaaacatcaagcaaa |
535 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
32118101 |
atgctgggactactactcttgcaagaaaaacatcaagcaaa |
32118141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 42255643 - 42255712
Alignment:
| Q |
239 |
caaagtgccatgtccaaatgacgatcgaaattgtagcattacttgtgtaaatttgaggtatcctaagggtg |
309 |
Q |
| |
|
||||| |||||||||||||||||| | || |||||| ||||||| ||||||||||||||| |||||||| |
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|
| T |
42255643 |
caaagggccatgtccaaatgacgagc-aagttgtagtgttacttgcataaatttgaggtatcttaagggtg |
42255712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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