View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4907-Insertion-3 (Length: 540)
Name: NF4907-Insertion-3
Description: NF4907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4907-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 41735587 - 41735298
Alignment:
| Q |
8 |
atttcatcccttcacttgtttcttctttatttcgttcttgatggcttaagtgatactcaaagataaattattttcttcatgtggtattcaaggataaatt |
107 |
Q |
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| T |
41735587 |
atttcatctcttcacttgtttcttctttatttcgttcttgatggcttaagtgatactcaaagataaattattttcttcatgtggtattcaaggataaatt |
41735488 |
T |
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| Q |
108 |
agttttttcatggtcactaattttcgtttctagtcgaaatcaaaatagaagtcattgtcaatagcataactagaaagttattctattggtaaattctctt |
207 |
Q |
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| T |
41735487 |
agttttttcatggtcactaattttcgtttctagtcgaaatcaaaatagaagccattgtcaatagcataactagaaagttattctattggtaaattctctt |
41735388 |
T |
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| Q |
208 |
ttgggttgagcttccaccgaaaagtcggctgataatggctacaaggtgagtttctgcaatgtgttttcaatcaaattagtgatcgacctt |
297 |
Q |
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| T |
41735387 |
ttgggttgagcttccaccgaaaagtcggctgataatggctacaaggtgaatttctgcaatgtgttttcaatcaaattagtggtcgacctt |
41735298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 350 - 540
Target Start/End: Complemental strand, 41735301 - 41735111
Alignment:
| Q |
350 |
ccttagccgactccttgaaattgaataccaatgtgacgatctataccgaaagtgtacactaaacaatgtaacaacaatagttcaatatatttaaatgacc |
449 |
Q |
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| T |
41735301 |
ccttagccgactccttgaaattgaataccaatgtgacgatctataccgaaagtgtacactaaacaatgtaacaacaatagttcaatatatttaaatgacc |
41735202 |
T |
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| Q |
450 |
gatttacaatggttctcgacatcaatttaattgcgaaaatgtcttttatcttgtaattcccatttttcactagtgatgggcgatagtcata |
540 |
Q |
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| T |
41735201 |
gatttacaatggttctcgacatcaatttaattgcgaaaatgtcttttatcttgtaattcccattttgcactagtgatgggcgatagtcata |
41735111 |
T |
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