View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4907-Insertion-4 (Length: 424)
Name: NF4907-Insertion-4
Description: NF4907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4907-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 424
Target Start/End: Complemental strand, 35572028 - 35571618
Alignment:
| Q |
8 |
cattgcattccaaagtttgttgtaaccagtgtgttagataagcatggatagaaatagcatattaaactgatgtttggtagtttttgtttggacatacccg |
107 |
Q |
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| T |
35572028 |
cattgcattccaaagtttgttgtaaccagtgtgttagataagcatggatagaaatagcatattaaactgatgtttggtagtttttgtttggacataaccg |
35571929 |
T |
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| Q |
108 |
tctggttcccggagaaagcagactttagtaaaccggagttacaaaacataattctagtctagtcagtgatagtttcagtcaggattcgaactccattctc |
207 |
Q |
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| T |
35571928 |
tctggttcccggggaaagcagactttagtaaaccggagttacaaaacataattctagtctagtcaatgatagtttcagtcaggattcgaactccattctc |
35571829 |
T |
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| Q |
208 |
tcaaatggttcggctttgatcgaagcttatgaaccttgagttcaactataatgtcctagtcatttgcatatggtggtactacaacaataatgggaagctt |
307 |
Q |
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| T |
35571828 |
tcaaatggttcggctttgatcgaagcttatgaaccttgagttcaactataatgtcctagtcatttggatatggtggtactacaacaataatgggaagctt |
35571729 |
T |
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| Q |
308 |
tttctcttggcttaattagaacagttttaacttgtgttaggtacttggtttggtccactcgagaaaggttataaattataatcttaaattcgtgtttctt |
407 |
Q |
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| T |
35571728 |
tttctcttggcttaattagaacagttttaacttgttttaggtact-----tggtccactcgagaaaggttat-aattataatcttaaattcgtgtttctt |
35571635 |
T |
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| Q |
408 |
attttgtgctttctttt |
424 |
Q |
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| T |
35571634 |
attttgtgctttctttt |
35571618 |
T |
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