View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4907-Insertion-5 (Length: 317)
Name: NF4907-Insertion-5
Description: NF4907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4907-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 41154367 - 41154056
Alignment:
| Q |
7 |
agtgcaaactaaaatatatggtttgcattttttaattgaaattcaaatgtgagtgatagtcttacatggacgagaaatgaggtaaataaataagtgactc |
106 |
Q |
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|||||||||||||||||||| |||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41154367 |
agtgcaaactaaaatatatgatttgcaatttttaattggaatttaaatgtgagtgatagtcttacatggacgagaaatgaggtaaataaataagtgactc |
41154268 |
T |
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| Q |
107 |
agtatatgaaaaaagtgactcctatatttgaaatcgtaaatgaannnnnnnnnacttgtttacttggtctattggcttaaatttatcttgatgtcaaata |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41154267 |
-gtatatgaaaaaagtgactcctatatttgaaatcgtaaatggatttttttttacttgtttacttggtctattgacttaaatttatcttgatgtcaaata |
41154169 |
T |
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| Q |
207 |
tgaaaaa--gtgactcttatagttatacttgaattcgtaaatgaacnnnnnnnacttgtttacttggtccattagcttaaatttatcttcatctcaaatt |
304 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41154168 |
tgaaaaaaagtgactcttatagttatacttgaattcgtaaatgaactttttttacttgtttacttggtccattagcttaaatttatcttcatctcaaatt |
41154069 |
T |
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| Q |
305 |
aagttatctagta |
317 |
Q |
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||||||||||||| |
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| T |
41154068 |
aagttatctagta |
41154056 |
T |
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