View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4907_high_4 (Length: 325)
Name: NF4907_high_4
Description: NF4907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4907_high_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 114 - 325
Target Start/End: Original strand, 34768671 - 34768882
Alignment:
| Q |
114 |
gacgaaataccctgcatgcgtttaagataaagacgatatttctgaagatgactcgcgacgttttctctggttaaaccgtcgacactcataagctgcatta |
213 |
Q |
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| T |
34768671 |
gacgaaataccctgcatgcgtttaagataaagacgatatttctgaagatgactcgcgacgttttctctggttaaaccgtcgacactcataagctgcatta |
34768770 |
T |
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| Q |
214 |
tcgtcttgggaacagcgttcttgataccgagatgtgccacggcgtcgacgaagcgtttgtggagctgtggggtccagacaagacgagggcgtttgagtgt |
313 |
Q |
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| T |
34768771 |
tcgtcttgggaacagcgttcttgataccgagatgtgccacggcgtcgacgaagcgtttgtggagctgtggggtccagacaagacgagggcgtttgagtgt |
34768870 |
T |
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| Q |
314 |
tcgagctggctc |
325 |
Q |
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| T |
34768871 |
tcgagctggctc |
34768882 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 34768570 - 34768640
Alignment:
| Q |
13 |
gaagaatatgtggcggtacaggggagctagcaaataaatgatcagtagcagcatcattaacagaagcagag |
83 |
Q |
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| T |
34768570 |
gaagaaaatgtggcggtacaggggagctagcaaataaatgatcagtagcagcatcattaacagaagcagag |
34768640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 24159932 - 24159837
Alignment:
| Q |
140 |
ataaagacgatatttctgaagatgactcgcgacgttttctctggttaaaccgtcgacactcataagctgcattatcgtcttgggaacagcgttctt |
235 |
Q |
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| T |
24159932 |
ataaagacgatatttctgtaaatgactagcaacattttctcttgttaacccttcaacattcatcaactgcataatcgttttcggaaccgcgttctt |
24159837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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