View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4907_high_5 (Length: 324)
Name: NF4907_high_5
Description: NF4907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4907_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 6036188 - 6035872
Alignment:
| Q |
1 |
taactatcaggaactcaaaccgaccgtcactaaatactaaataactaactgattttcgtctggtcctctgacagaatcaacatcctctaataaaaacgaa |
100 |
Q |
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| T |
6036188 |
taactatcatgaacactaaccgaccctcactaaatactaaataactaactaattttcgtctggtgctctgacagaatcaacatcctctaataaaaacgaa |
6036089 |
T |
|
| Q |
101 |
tggctgagatgatctttaatgttagacattccatactcgatatactcgtttgcatttctaccaacaacatctaccaattataagtttcaatatgccggaa |
200 |
Q |
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| T |
6036088 |
cggttgagatgatctttaatgttagacattccatactcgatatactcgtttgcatttctaccaacaacatctaccaattataagtttcaatatgccggaa |
6035989 |
T |
|
| Q |
201 |
acaaaatgctttctatctaaattattatttcgccacatagactgaacttcacatatttccctaaacttctgattgaaaagattgtgtttgtctttcattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6035988 |
acaaaatgctttctatctaaattattatttcgccacatagactgaacttcacatatttccctaaacttctgatttaaaagattgtgtttgtctttcattg |
6035889 |
T |
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| Q |
301 |
aatatgtttcagtatta |
317 |
Q |
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|||||||||||| |||| |
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| T |
6035888 |
aatatgtttcagaatta |
6035872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 31492992 - 31493066
Alignment:
| Q |
238 |
tagactgaacttcacatatttccctaaacttctgattgaaaagattgtgtttgtctttcattgaatatgtttcag |
312 |
Q |
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| T |
31492992 |
tagattgaatttcacacatctccctaaacttctgattgaacaaactgagtttgtctttcattgaatctgcttcag |
31493066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 31386796 - 31386748
Alignment:
| Q |
231 |
cgccacatagactgaacttcacatatttccctaaacttctgattgaaaa |
279 |
Q |
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||||| |||||||||| ||||||| | |||||||||||||||||||||| |
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| T |
31386796 |
cgccatatagactgaatttcacatgtctccctaaacttctgattgaaaa |
31386748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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