View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4907_low_1 (Length: 509)
Name: NF4907_low_1
Description: NF4907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4907_low_1 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 41245492 - 41245970
Alignment:
| Q |
18 |
agcttagatctcacataaacaaaaactataaggagtttaaaataaatatcaattttcaacttataaatcaagcaaaatatgactgaaagaaaaacagaat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41245492 |
agcttagatctcacataaacaaaaactataaggagtttaaaataaatatcaattttcaacttataaatcaaacaaaatatgactgaaagaaaaacagaat |
41245591 |
T |
|
| Q |
118 |
tggaatggaaaattacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataatt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41245592 |
tggaatggaaaattacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataatt |
41245691 |
T |
|
| Q |
218 |
caaccctttcagaatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacc |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41245692 |
caaccctttcagaatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacc |
41245791 |
T |
|
| Q |
318 |
tcggtgatgaaattaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcag |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41245792 |
tcggtgatgaaattaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcag |
41245891 |
T |
|
| Q |
418 |
aataaagcctctctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctcaattccttc |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41245892 |
aataaagcctctctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctctattccttc |
41245970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 289
Target Start/End: Complemental strand, 42725380 - 42725223
Alignment:
| Q |
132 |
acctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcagaa |
231 |
Q |
| |
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|||||||||| |||||||||||||| | |||||||||||| |||||||| || || || || || ||||| || || | ||| | ||| |||| |||| |
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| T |
42725380 |
acctggccaatgttcccattaacaaagatattactgcaattaagatctctgtggataatacagggatcatgtgtatgaagatactccaatccttcaagaa |
42725281 |
T |
|
| Q |
232 |
tctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctata |
289 |
Q |
| |
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|| ||||||||||||| || ||||| || |||||||||| ||||||||||||||| |
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| T |
42725280 |
cttgttttgaccatttcttaaacgccttaatcgaaacatgtcgatgtttcttcctata |
42725223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 130 - 496
Target Start/End: Original strand, 22263637 - 22264003
Alignment:
| Q |
130 |
ttacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcag |
229 |
Q |
| |
|
||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||| || |
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|
| T |
22263637 |
ttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaacccttccaa |
22263736 |
T |
|
| Q |
230 |
aatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaa |
329 |
Q |
| |
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|| || | ||||| |||||||| ||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
22263737 |
tatttgtttagaccacttcttcaaagccttaagagaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgatgaaa |
22263836 |
T |
|
| Q |
330 |
ttaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctct |
429 |
Q |
| |
|
|| || ||||| | | ||| ||||||||| | |||||| ||||||||||||||||||||| | || | | | ||||||||||| ||||| || | |
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| T |
22263837 |
ttcagtgtgttatgctccttatccctccaaacattgtaaagtgcaatgatgtttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtcttt |
22263936 |
T |
|
| Q |
430 |
ctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctcaattccttc |
496 |
Q |
| |
|
| | ||| ||||| |||| | ||| ||||| ||||| ||||| ||||||||||| || |||||||| |
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| T |
22263937 |
caatcattgcagggtcattgctgaaatttctgagcttaacttgattccatgctacttctattccttc |
22264003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 130 - 496
Target Start/End: Complemental strand, 22270203 - 22269837
Alignment:
| Q |
130 |
ttacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcag |
229 |
Q |
| |
|
||||||||||| ||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||| ||||||||||||||||||| || |
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|
| T |
22270203 |
ttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaacccttccaa |
22270104 |
T |
|
| Q |
230 |
aatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaa |
329 |
Q |
| |
|
|| || | ||||| |||||||| ||||| | |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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|
| T |
22270103 |
tatttgtttagaccacttcttcaaagccttaagagaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgatgaaa |
22270004 |
T |
|
| Q |
330 |
ttaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaagcctct |
429 |
Q |
| |
|
|| || ||||| | | ||| ||||||||| | |||||| ||||||||||||||||||||| | || | | | ||||||||||| ||||| || | |
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|
| T |
22270003 |
ttcagtgtgttatgctccttatccctccaaacattgtaaagtgcaatgatgtttttgtttgtcatgtttttaagaagtctcacttcagagtaaagtcttt |
22269904 |
T |
|
| Q |
430 |
ctaccatagcaggttcatcacagaagtttcttagcttcacttggttccatgctacctcaattccttc |
496 |
Q |
| |
|
| | ||| ||||| |||| | ||| ||||| ||||| ||||| ||||||||||| || |||||||| |
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|
| T |
22269903 |
caatcattgcagggtcattgctgaaatttctgagcttaacttgattccatgctacttctattccttc |
22269837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 124 - 427
Target Start/End: Original strand, 45874200 - 45874503
Alignment:
| Q |
124 |
ggaaaattacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccc |
223 |
Q |
| |
|
||||| ||||||||||| ||| ||||| | ||||||||| |||||||||||||||||||||||||| || || |||||| ||||||||||||||||| |
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|
| T |
45874200 |
ggaaatttacctggccagtatttccattgataaacacattgctgcaattgagatctctatgaatgatacatggatcatgaacatgcaaataattcaaccc |
45874299 |
T |
|
| Q |
224 |
tttcagaatctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtg |
323 |
Q |
| |
|
|| || ||| ||| | ||||| |||||||| ||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| || ||| |
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|
| T |
45874300 |
ttccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtg |
45874399 |
T |
|
| Q |
324 |
atgaaattaagcgtgttgtttcgatcatcgctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaa |
423 |
Q |
| |
|
||||||||||| |||| | ||||| ||||||||| ||||| |||||||||||| |||| ||| |||||| | || || |||||||| |||| |
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|
| T |
45874400 |
atgaaattaagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgttttcgtttctcatgcttctaagcaatctaacttcagagtaaa |
45874499 |
T |
|
| Q |
424 |
gcct |
427 |
Q |
| |
|
|||| |
|
|
| T |
45874500 |
gcct |
45874503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 153 - 424
Target Start/End: Original strand, 10082862 - 10083133
Alignment:
| Q |
153 |
acaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcagaatctgccttgaccatttcttca |
252 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||||| | ||||| ||||||| |
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|
| T |
10082862 |
acaaaaacattactgcaattgaggtctctatgaatgatacaaggatcatgcacatgcaaataattcaaccctttcaaaatctgcttagaccacttcttca |
10082961 |
T |
|
| Q |
253 |
atgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaattaagcgtgttgtttcgatcatc |
352 |
Q |
| |
|
| || | | ||||||||| |||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| || || || | |||||| |
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|
| T |
10082962 |
aagcttgaagagaaacatgcttatgtttcttcctatattccctcaaattcccacttgtacaaacctcagtgatgaaattcagtgtattatgatcatcatc |
10083061 |
T |
|
| Q |
353 |
gctccaaacactataaagttcaatgatgtttttgtttgtcaagcttctcaataacctcacttcagaataaag |
424 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||| |||| |||||| | ||| ||||||||||| ||||| |
|
|
| T |
10083062 |
cctccaaacattataaagtgcaatgatgtttctgttcgtcatgcttctaagtaatctcacttcagagtaaag |
10083133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 132 - 289
Target Start/End: Complemental strand, 19354 - 19197
Alignment:
| Q |
132 |
acctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcagaa |
231 |
Q |
| |
|
|||||||||| |||||||||||||| | |||||||||||| |||||||| || || || || || ||||| || || | ||| | ||| |||| |||| |
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|
| T |
19354 |
acctggccaatgttcccattaacaaagatattactgcaattaagatctctgtggataatacagggatcatgtgtatgaagatactccaatccttcaagaa |
19255 |
T |
|
| Q |
232 |
tctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctata |
289 |
Q |
| |
|
|| ||||||||||||| || ||||| || |||||||||| ||||||||||||||| |
|
|
| T |
19254 |
cttgttttgaccatttcttaaacgccttaatcgaaacatgtcgatgtttcttcctata |
19197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 20625809 - 20625849
Alignment:
| Q |
198 |
tcatgagtgtgcaaataattcaaccctttcagaatctgcct |
238 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
20625809 |
tcatgaatgtgcaaataattcaaccctttcaaaatctgcct |
20625849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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