View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4907_low_2 (Length: 439)
Name: NF4907_low_2
Description: NF4907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4907_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 39852022 - 39851563
Alignment:
| Q |
1 |
atggaattaaagtcaggtgcagaggtacctcaattgagaatcacttaatatattaaatgttggaaaagacactttcatgctgtttatgaa---------- |
90 |
Q |
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| T |
39852022 |
atggaattaaagtcaggtgcagaggtacctcaattgagaatcacttaatatattaaatgttggaaaagacactttcatgctgtttatgaaaaaagggatg |
39851923 |
T |
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| Q |
91 |
-------gtgaatttcatatagatatgaactcgcacacactttttagtattttgttttccaagatgaataactaaatgctacttcttcccattcattcat |
183 |
Q |
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| T |
39851922 |
atatgaagtgaatttcatatatatatgaactcgcacacactttttagtattttgttttccaagatgaataactaaatgctacttcttcccattcattcat |
39851823 |
T |
|
| Q |
184 |
tttcttcttttaacacacacaaaacaactcaacctaaacctattcgaaaccaaacccttattca-ctc----ggaaaaaacaacattctagaattctcca |
278 |
Q |
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| T |
39851822 |
tttcttctttcaacacacacaaaacaactcaacctaaacctattcgaaaccaaacccttattcagctcaacgggaaaaaacaacattctagaattctcca |
39851723 |
T |
|
| Q |
279 |
caacctaagactgtcgaattcagctcaacgggtttccatttgtttcacaaggtactataactccacacaacattctacaattccacacaaggtact---- |
374 |
Q |
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| T |
39851722 |
caacctaagactgtcgaattcagctcaacgggtttccatttgtttcacaaggtactataactccagacatcattctacaattccacacaaggtactataa |
39851623 |
T |
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| Q |
375 |
----------attttgaacctaatccaaatactttcaatattttgattcatggttattgt |
424 |
Q |
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| T |
39851622 |
tgcatcttacattttcaacctaatccaaatactttcaatattttgattcatggttattgt |
39851563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 43187236 - 43187173
Alignment:
| Q |
3 |
ggaattaaagtcaggtgcagaggtacctcaattgagaatcacttaatatattaaatgttggaaa |
66 |
Q |
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||||||||| ||||||||||||| | |||| |||||||||||||||||||||||| |||||| |
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| T |
43187236 |
ggaattaaaatcaggtgcagaggcatgtcaagagagaatcacttaatatattaaatgatggaaa |
43187173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 424
Target Start/End: Complemental strand, 43172354 - 43172322
Alignment:
| Q |
392 |
aatactttcaatattttgattcatggttattgt |
424 |
Q |
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| T |
43172354 |
aatacttttaatattttgattcatggttattgt |
43172322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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