View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_10 (Length: 476)
Name: NF4908_high_10
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 457
Target Start/End: Complemental strand, 21120977 - 21120533
Alignment:
| Q |
13 |
aatatctagaaactagccgacaatgtaacaatcttagctaacccagttgagttggcatgatggtattagcttggacttaggagtgtgcttctcctcaagg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120977 |
aatatctagaaactagccgacaatgtaacaatcttagctaacccagttgagttggcatgatggtattagcttggacttaggagtgtgcttctcctcaagg |
21120878 |
T |
|
| Q |
113 |
tttcagattctactttccaatgccaatttgagtttgctaatttagcttaaaataaaataaaaattaactgtcttaactagtttatggacaatttcaattg |
212 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120877 |
tttcagattctactttccaatgccaatttgggttggctaatttagcttaaaataaaataaaaattaactgtcttaactagtttatggacaatttcaattg |
21120778 |
T |
|
| Q |
213 |
ttgtctttgcagaaactcaacactataatttgtataaaattgtttaaacaaccttagctaatttatggataatttcatttgtttcgtctttgcataaact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120777 |
ttgtctttgcagaaactcaacactataatttgtataaaattgtttaaacaaccttagctaatttatggataatttcatttgtttcgtctttgcataaact |
21120678 |
T |
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| Q |
313 |
caacactataaccacttacnnnnnnnnnnnnnnnnaagaaaatagccccttgttttgttgcatcatgtttcgggaagtaaagatgtcaaccattcttttt |
412 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21120677 |
caacactataaccacttactttttattttatttttaagaaaatagccccttgttttgttgcatcatgtttcgggaagtaaagatgtcaaccattcttttt |
21120578 |
T |
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| Q |
413 |
gaatcaagctcaaaatcaataagactcaagtttagttcataaacc |
457 |
Q |
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| T |
21120577 |
gaatcaagctcaaaatcaataagactcaagtttagttcataaacc |
21120533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 40284060 - 40284000
Alignment:
| Q |
54 |
cccagttgagttggcatgatggtattagcttgg-acttaggagtgtgcttctcctcaaggt |
113 |
Q |
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| T |
40284060 |
cccacttgggttggcatgatggtattggcttgggacttgggagtgtgcatctcctcaaggt |
40284000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 43590906 - 43590966
Alignment:
| Q |
51 |
taacccagttgagttggcatgatggtattagctt-ggacttaggagtgtgcttctcctcaa |
110 |
Q |
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||||||||||| |||||| || ||||||| |||| |||||| |||||||||| |||||||| |
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| T |
43590906 |
taacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaa |
43590966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 10338239 - 10338183
Alignment:
| Q |
63 |
gttggcatgatggtattagcttgg-acttaggagtgtgcttctcctcaaggtttcag |
118 |
Q |
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||||||||| ||||||| |||||| || |||||||||||| ||||||||||| |||| |
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| T |
10338239 |
gttggcatggtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcag |
10338183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 23052588 - 23052532
Alignment:
| Q |
63 |
gttggcatgatggtattagcttgg-acttaggagtgtgcttctcctcaaggtttcag |
118 |
Q |
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|||||| || ||||||| |||||| |||| |||||||||||||||||||||| |||| |
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| T |
23052588 |
gttggcctggtggtattggcttgggacttgggagtgtgcttctcctcaaggtctcag |
23052532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 52116858 - 52116798
Alignment:
| Q |
51 |
taacccagttgagttggcatgatggtattagctt-ggacttaggagtgtgcttctcctcaa |
110 |
Q |
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||||||||||| |||||| || ||||||| |||| |||||| |||||||||| |||||||| |
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| T |
52116858 |
taacccagttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaa |
52116798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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