View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4908_high_11 (Length: 473)
Name: NF4908_high_11
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 202 - 331
Target Start/End: Original strand, 34675618 - 34675747
Alignment:
| Q |
202 |
ttatggcatctaagattaagccacttttcttatgttgatttgcaaaatgtttccaaacaatttccctttgtatctaataataatgatatgccaccttgta |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34675618 |
ttatggcatctaagattaagccacttttcttatgttgatttgcaaaatgtttccaaacaatttccctttgtatctaataataatgatatgccaccttgta |
34675717 |
T |
|
| Q |
302 |
atttcctgtcattttgctaaacatagaaat |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34675718 |
atttcctgtcattttgctaaacatagaaat |
34675747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 328 - 456
Target Start/End: Original strand, 34675891 - 34676019
Alignment:
| Q |
328 |
aaattaccttttgcacgtagtgtatccaaatatattgctccttttgatatcatgcatgctaatttgtggtgcccttattctatcatttcaattttaggat |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34675891 |
aaattaccttttgcacgtagtgtatccaaatatattgctccttttgatatcatgcatgctaatttgtggtgcccttattctatcatttcaattttgggat |
34675990 |
T |
|
| Q |
428 |
acaaatatttctttacacgtgttgatgat |
456 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
34675991 |
acaaatatttccttacacgtgttgatgat |
34676019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 34675468 - 34675571
Alignment:
| Q |
87 |
accaagcttattatgacgaaagtctttcttcaaaaacatagggaggaatcccacgaaaaacccaactag-tgttaatcttcaatgtggattatatgtcat |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34675468 |
accaagcttattatgacgaaagtctttcttcaaaaacatagggaggaatcccaccaaaaacccaactagatgttaatcttcaatgtggattatatgtcat |
34675567 |
T |
|
| Q |
186 |
agac |
189 |
Q |
| |
|
|||| |
|
|
| T |
34675568 |
agac |
34675571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University