View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4908_high_13 (Length: 453)

Name: NF4908_high_13
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4908_high_13
NF4908_high_13
[»] chr8 (13 HSPs)
chr8 (240-445)||(29960910-29961112)
chr8 (72-234)||(4834917-4835079)
chr8 (140-202)||(41474293-41474355)
chr8 (84-147)||(33938562-33938625)
chr8 (84-147)||(16499779-16499842)
chr8 (125-183)||(20896187-20896245)
chr8 (152-232)||(16467583-16467663)
chr8 (84-147)||(16508704-16508767)
chr8 (18-73)||(29961111-29961170)
chr8 (122-208)||(35793177-35793263)
chr8 (125-179)||(44077744-44077798)
chr8 (126-183)||(44132874-44132931)
chr8 (75-131)||(16467673-16467729)
[»] chr4 (17 HSPs)
chr4 (75-232)||(52673148-52673305)
chr4 (84-232)||(29544121-29544269)
chr4 (92-241)||(46079307-46079456)
chr4 (84-234)||(53406448-53406597)
chr4 (89-228)||(29693184-29693321)
chr4 (127-187)||(29724351-29724411)
chr4 (137-177)||(40202260-40202300)
chr4 (126-183)||(53176872-53176929)
chr4 (135-183)||(30643602-30643650)
chr4 (126-186)||(44015413-44015473)
chr4 (137-176)||(1208706-1208745)
chr4 (126-177)||(19473052-19473103)
chr4 (128-183)||(31455897-31455952)
chr4 (81-147)||(9116201-9116267)
chr4 (126-187)||(52198377-52198438)
chr4 (127-183)||(50041816-50041872)
chr4 (127-183)||(50049038-50049094)
[»] chr2 (13 HSPs)
chr2 (75-230)||(6752024-6752179)
chr2 (115-232)||(39728970-39729087)
chr2 (75-224)||(41069623-41069772)
chr2 (87-232)||(31750448-31750591)
chr2 (122-234)||(23395915-23396027)
chr2 (122-230)||(11226132-11226240)
chr2 (122-183)||(32832590-32832651)
chr2 (152-215)||(3496805-3496868)
chr2 (152-215)||(15141881-15141944)
chr2 (84-209)||(19037016-19037130)
chr2 (137-183)||(36562752-36562798)
chr2 (126-183)||(13477690-13477747)
chr2 (126-175)||(40204728-40204777)
[»] chr1 (19 HSPs)
chr1 (69-225)||(48914929-48915085)
chr1 (75-234)||(48915127-48915284)
chr1 (69-216)||(48915320-48915467)
chr1 (75-232)||(50539678-50539835)
chr1 (74-232)||(26478546-26478704)
chr1 (75-232)||(19456261-19456417)
chr1 (123-232)||(24671140-24671249)
chr1 (138-183)||(20717120-20717165)
chr1 (152-241)||(27032326-27032415)
chr1 (127-187)||(49177424-49177483)
chr1 (84-147)||(48843434-48843497)
chr1 (137-183)||(5398034-5398080)
chr1 (86-234)||(27907685-27907822)
chr1 (122-183)||(49177278-49177337)
chr1 (126-183)||(19431391-19431448)
chr1 (72-131)||(51748626-51748685)
chr1 (122-183)||(17923859-17923920)
chr1 (136-185)||(25586867-25586916)
chr1 (125-173)||(3950295-3950343)
[»] chr7 (15 HSPs)
chr7 (74-225)||(2628385-2628536)
chr7 (81-232)||(9488725-9488877)
chr7 (81-183)||(32279250-32279352)
chr7 (84-215)||(16876686-16876806)
chr7 (75-215)||(46425278-46425407)
chr7 (75-147)||(34328163-34328235)
chr7 (142-183)||(33747989-33748030)
chr7 (122-183)||(37685187-37685248)
chr7 (81-215)||(23185870-23185992)
chr7 (152-215)||(18867954-18868017)
chr7 (123-176)||(11369053-11369106)
chr7 (146-187)||(15667897-15667938)
chr7 (126-187)||(32204771-32204832)
chr7 (136-177)||(43368497-43368538)
chr7 (157-232)||(34328091-34328164)
[»] chr3 (14 HSPs)
chr3 (84-232)||(10688592-10688740)
chr3 (75-184)||(47548868-47548977)
chr3 (84-232)||(50700003-50700144)
chr3 (109-183)||(46348376-46348450)
chr3 (75-215)||(4037142-4037271)
chr3 (152-241)||(49279464-49279553)
chr3 (122-183)||(39485467-39485528)
chr3 (139-183)||(39488495-39488539)
chr3 (152-215)||(11233507-11233570)
chr3 (84-147)||(39350752-39350815)
chr3 (87-133)||(34272415-34272461)
chr3 (142-176)||(42466974-42467008)
chr3 (126-175)||(16278813-16278862)
chr3 (75-147)||(39994249-39994321)
[»] chr5 (14 HSPs)
chr5 (74-202)||(34928806-34928936)
chr5 (87-197)||(27554885-27554995)
chr5 (81-226)||(22658818-22658962)
chr5 (84-220)||(2651618-2651745)
chr5 (92-176)||(14151909-14151993)
chr5 (75-215)||(37515524-37515652)
chr5 (122-187)||(18267851-18267916)
chr5 (126-183)||(33953161-33953218)
chr5 (75-147)||(37480340-37480412)
chr5 (136-183)||(18623597-18623644)
chr5 (73-140)||(22473601-22473667)
chr5 (125-183)||(22653513-22653571)
chr5 (126-183)||(19824617-19824674)
chr5 (126-177)||(14281810-14281862)
[»] chr6 (9 HSPs)
chr6 (75-215)||(9928262-9928391)
chr6 (126-188)||(26847168-26847230)
chr6 (126-182)||(457683-457739)
chr6 (152-233)||(31743843-31743922)
chr6 (86-147)||(22469757-22469818)
chr6 (126-173)||(24226101-24226148)
chr6 (146-215)||(9549369-9549436)
chr6 (152-209)||(7506639-7506696)
chr6 (157-241)||(22469674-22469758)
[»] scaffold0176 (1 HSPs)
scaffold0176 (84-147)||(15149-15212)
[»] scaffold0289 (1 HSPs)
scaffold0289 (146-187)||(20314-20355)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 240 - 445
Target Start/End: Complemental strand, 29961112 - 29960910
Alignment:
Q  240 aactctaatgagacacttaattcccc-aagactagttgttagaaactgcttttgccacctaatcttgcaatccctcaaaacatgcaacaaagtttcaaaa 338  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29961112 aactccaatgagacacttacttcccccaagactagttgttagaaactgcttttgccacctaatcttgcaatccctcaaaacatgcaacaaagtttcaaaa 29961013  T
Q  339 tcggcacaataaagtgggacatcgattgggctcagtcattcttgcatgcattatatcatnnnnnnnntctatacaaatttaatcaataaattcatttgaa 438  Q
    ||||||||||||||||||||||||| ||||||||||||||||    | |||||||||||        |||||||||||||||||||||||||||||||||    
T  29961012 tcggcacaataaagtgggacatcgactgggctcagtcattct----tacattatatcataaaaaaaatctatacaaatttaatcaataaattcatttgaa 29960917  T
Q  439 gtattat 445  Q
    |||||||    
T  29960916 gtattat 29960910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 72 - 234
Target Start/End: Original strand, 4834917 - 4835079
Alignment:
Q  72 aatgggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattat 171  Q
    |||||||| || ||||||||||||||||||||||| ||||| ||| ||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  4834917 aatgggaaatacttgggtgccatagttttttggtgatattggtgacataggttcattttagatgagagagaatgatgaatgaatgattaaaataaattat 4835016  T
Q  172 ttagataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaatg 234  Q
    |||| | | ||| |||  |||| |||||||  |||| ||||||||||||||||| ||||||||    
T  4835017 ttaggtgaaagagaatgagttgttaagagaaagatagacacaaaagtatcaatggcaccaatg 4835079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 41474293 - 41474355
Alignment:
Q  140 aaaatgatgaatgaattattaaaataaattatttagataagagataatatgttggtaagagag 202  Q
    ||||| |||||||||| |||||||||||||||||| ||||||||||||| |||| ||||||||    
T  41474293 aaaataatgaatgaatgattaaaataaattatttaaataagagataataagttgttaagagag 41474355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 33938562 - 33938625
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgat 147  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||||||||| | ||| ||||||    
T  33938562 ttgggtgccatagttttttggtgccattgatgacataggttcattttagataaaagataatgat 33938625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 16499779 - 16499842
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgat 147  Q
    |||||||||||||||||||||||  |||| ||||||| |||||||||| || ||||| ||||||    
T  16499779 ttgggtgccatagttttttggtgacattggtgatataggttcattttatatgagagagaatgat 16499842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 20896187 - 20896245
Alignment:
Q  125 cattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||||||||| ||||| ||||||  |||||| ||||||||||||||||||||| |||||    
T  20896187 cattttagatgagagataatgatatatgaatgattaaaataaattatttagatgagaga 20896245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 16467663 - 16467583
Alignment:
Q  152 gaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaa 232  Q
    |||| |||||| |||||||||||||| ||||| ||||  ||  |||||||| ||||||||||||  |||| ||||||||||    
T  16467663 gaatgattaaactaaattatttagatgagagagaataaattattaagagagagataaacacaaagttatctatgacaccaa 16467583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 16508704 - 16508767
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgat 147  Q
    |||||||||||| ||||||||||  |||| ||||||| |||||||||| || ||||| ||||||    
T  16508704 ttgggtgccatatttttttggtgacattggtgatataggttcattttatatgagagagaatgat 16508767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 29961170 - 29961111
Alignment:
Q  18 attcacacacatcttctgttctcaat----tgtcattcccagctacttttagttgaaaaa 73  Q
    ||||||||||||||||| ||||||||    ||||||||| |||||||| |||||||||||    
T  29961170 attcacacacatcttctcttctcaattgtctgtcattcctagctacttctagttgaaaaa 29961111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 35793263 - 35793177
Alignment:
Q  122 gttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataatatgttggtaagagagggataa 208  Q
    |||||||| |||| || || |||||  ||||||| |||||||||||||||||| || |||||||||  || | |||||||| |||||    
T  35793263 gttcatttgagatgagtgacaatgaaaaatgaataattaaaataaattatttaaatgagagataatgagtagttaagagagagataa 35793177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 44077744 - 44077798
Alignment:
Q  125 cattttagattagagaaaatgatgaatgaattattaaaataaattatttagataa 179  Q
    |||||||||| | ||| | |||||||| ||| |||||||||||||||||||||||    
T  44077744 cattttagatgaaagagagtgatgaataaataattaaaataaattatttagataa 44077798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 44132874 - 44132931
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||||| ||||| ||||||  |||||| ||||||||||||||||| ||| |||||    
T  44132874 attttagatgagagataatgatagatgaatgattaaaataaattattttgatgagaga 44132931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 16467729 - 16467673
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcatttta 131  Q
    ||||| || |||||||| ||||||||||||||  |||| ||||||| ||||||||||    
T  16467729 gggaaatacttgggtgcgatagttttttggtgacattggtgatataggttcatttta 16467673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 52673148 - 52673305
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattta 174  Q
    ||||| || |||||||||||||||||||||||  |||| ||| ||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||||     
T  52673148 gggaaatacttgggtgccatagttttttggtgtcattggtgacataggttcattttagatgagagagaatgatgaatgaataattaaaataaattatttt 52673247  T
Q  175 gataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaa 232  Q
    ||| ||||| |||||||||||||||||| |||| |||||||| |||||||||||||||    
T  52673248 gatgagagagaatatgttggtaagagagagatagacacaaaaatatcaatgacaccaa 52673305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 232
Target Start/End: Original strand, 29544121 - 29544269
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||| |||||||||||||||| |||| ||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| | |||    
T  29544121 ttgggtgtcatagttttttggtgccattggtgacatatgttcattttagatgagagaaaatgataaatgaatgattaaaataaattatttagatgataga 29544220  T
Q  184 taatatgttggtaagagagggataaacacaaaagtatcaatgacaccaa 232  Q
     |||  |||| ||| |||| |||| ||||||| || |||||| ||||||    
T  29544221 gaatgagttgttaatagagagatagacacaaaggtgtcaatggcaccaa 29544269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 92 - 241
Target Start/End: Original strand, 46079307 - 46079456
Alignment:
Q  92 catagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataatatgt 191  Q
    |||||||||||||||| |||||||| ||| ||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||| ||||| |||  ||    
T  46079307 catagttttttggtgccattgatgacataggttcattttagatgagagagaatgatcaatgaatgattaaaataaattatttagatgagagagaatgagt 46079406  T
Q  192 tggtaagagagggataaacacaaaagtatcaatgacaccaatgataccaa 241  Q
    || |||||||  |||| ||||||| ||   |||| ||||||||| |||||    
T  46079407 tgttaagagacagatagacacaaatgtgctaatggcaccaatgacaccaa 46079456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 84 - 234
Target Start/End: Original strand, 53406448 - 53406597
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||| ||||  |||||| |||  ||| ||||| ||||||||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||||    
T  53406448 ttgggtgtcataactttttgatgccgttggtgatacatgttcattttagatgaaagaaaatgatgaataaataattaaaataaattatttagataagaga 53406547  T
Q  184 taatatgttggtaagagagggataaacacaaaagtatcaatgacaccaatg 234  Q
     |||   ||| |||||||| |||| |||| || ||||||||||||||||||    
T  53406548 aaatgaattgttaagagagagatagacac-aaggtatcaatgacaccaatg 53406597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 89 - 228
Target Start/End: Complemental strand, 29693321 - 29693184
Alignment:
Q  89 tgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataata 188  Q
    ||||||| ||||||| ||| |||||| | ||   |||||||||||| ||||| |||||| ||| ||| |||||||||||||||||| |||||||||||||    
T  29693321 tgccataattttttgatgccattgataacatggattcattttagatgagagagaatgataaataaataattaaaataaattatttaaataagagataata 29693222  T
Q  189 tgttggtaagagagggataaacacaaaagtatcaatgaca 228  Q
    ||||| |||||||  |||| ||||||||||| ||||||||    
T  29693221 tgttgttaagaga--gatagacacaaaagtaccaatgaca 29693184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 29724351 - 29724411
Alignment:
Q  127 ttttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataat 187  Q
    |||||||| | ||| ||| || ||||||| |||||||||||||||||||||||||||||||    
T  29724351 ttttagatgatagagaataataaatgaatgattaaaataaattatttagataagagataat 29724411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 40202260 - 40202300
Alignment:
Q  137 gagaaaatgatgaatgaattattaaaataaattatttagat 177  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  40202260 gagataatgatgaatgaattattaaaataaattatttagat 40202300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 53176929 - 53176872
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||||| | |||| || |||||||||| ||||||||||||||||||||| |||||    
T  53176929 attttagatgacagaagataatgaatgaatgattaaaataaattatttagatgagaga 53176872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 30643602 - 30643650
Alignment:
Q  135 tagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||||| ||||||| |||||| ||||||||||||||||||||| |||||    
T  30643602 tagagataatgatggatgaatgattaaaataaattatttagatgagaga 30643650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 44015413 - 44015473
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataa 186  Q
    ||||||||| ||| | ||||||  |||||| ||||||||||||||||||||| ||||||||    
T  44015413 attttagatgagaaagaatgatagatgaatgattaaaataaattatttagatgagagataa 44015473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 1208706 - 1208745
Alignment:
Q  137 gagaaaatgatgaatgaattattaaaataaattatttaga 176  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  1208706 gagagaatgatgaatgaatgattaaaataaattatttaga 1208745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 19473052 - 19473103
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttagat 177  Q
    ||||||||  ||||||||||||  |||||| |||||||||||||||||||||    
T  19473052 attttagaggagagaaaatgatacatgaatgattaaaataaattatttagat 19473103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 31455897 - 31455952
Alignment:
Q  128 tttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||| | ||| ||||| |||||||| ||||||||||||||||||||| |||||    
T  31455897 tttagatgaaagagaatgaagaatgaatgattaaaataaattatttagatgagaga 31455952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 9116201 - 9116267
Alignment:
Q  81 tatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgat 147  Q
    ||||||||||||||| |||||||||   |||||||| ||| ||||||||||||| | ||| ||||||    
T  9116201 tatttgggtgccataattttttggtctcattgatgacataggttcattttagatgaaagagaatgat 9116267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 52198438 - 52198377
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataat 187  Q
    ||||||||| ||||| ||||||  || ||| ||||||||||||||||| ||| |||||||||    
T  52198438 attttagatgagagataatgatagataaatgattaaaataaattattttgatgagagataat 52198377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 50041816 - 50041872
Alignment:
Q  127 ttttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||||||| ||||| ||||||  |||||| ||||||||||||||||| ||| |||||    
T  50041816 ttttagatgagagataatgatagatgaatgattaaaataaattattttgatgagaga 50041872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 50049038 - 50049094
Alignment:
Q  127 ttttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||||||| ||||| ||||||  |||||| ||||||||||||||||| ||| |||||    
T  50049038 ttttagatgagagataatgatagatgaatgattaaaataaattattttgatgagaga 50049094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 230
Target Start/End: Original strand, 6752024 - 6752179
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattta 174  Q
    ||||| || |||||||||||||||||||||| | |||||||| ||| ||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||    
T  6752024 gggaaatacttgggtgccatagttttttggtaccattgatgacataagttcattttagatgagagagaatgataaatgaatgattaaaataaattattta 6752123  T
Q  175 gataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacacc 230  Q
    ||| ||||| | || |||| |||||||| |||| ||||| | ||||||||||||||    
T  6752124 gatgagagaaagtaagttgttaagagagagatagacacagaggtatcaatgacacc 6752179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 39729087 - 39728970
Alignment:
Q  115 gatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaa 214  Q
    |||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||  ||| ||||||    
T  39729087 gatataagttcattttagatgagagagaatgatgaatgaatgattaaaataaattatttagatgagagagaatatgttggtaagaaagaaatagacacaa 39728988  T
Q  215 aagtatcaatgacaccaa 232  Q
    ||||||||||| ||||||    
T  39728987 aagtatcaatggcaccaa 39728970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 41069623 - 41069772
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattta 174  Q
    ||||| || |||||||||||| ||||||||||| |||| ||| ||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  41069623 gggaaatacttgggtgccataattttttggtgccattggtgacataggttcattttagatgagagagaatgatgaatgaatgattaaaataaattattta 41069722  T
Q  175 gataagagataatatgttggtaagagagggataaacacaaaagtatcaat 224  Q
    ||| ||||| |||   ||| |||||||  |||| ||||||| ||||||||    
T  41069723 gatgagagagaatgaattgttaagagacagatagacacaaatgtatcaat 41069772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 31750591 - 31750448
Alignment:
Q  87 ggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataa 186  Q
    ||||||||||||| ||||||| |||| ||| |||| |||||||||||| | ||| |||||||||||||| |||||||||||  |||||||| ||||| ||    
T  31750591 ggtgccatagtttgttggtgccattggtgacatatattcattttagatcacagagaatgatgaatgaatgattaaaataaa--atttagatgagagaaaa 31750494  T
Q  187 tatgttggtaagagagggataaacacaaaagtatcaatgacaccaa 232  Q
    |   ||| |||||||| |||| ||||||| ||||||||| ||||||    
T  31750493 tgaattgttaagagagagatagacacaaaggtatcaatggcaccaa 31750448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 23396027 - 23395915
Alignment:
Q  122 gttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaaagtatc 221  Q
    ||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||| | ||| |||  |||| |||||||| |||| ||||||| ||| |    
T  23396027 gttcattttagatgagagagaatgataaatgaatgattaaaataaattatttagatgatagagaatgagttgttaagagagagatagacacaaatgtacc 23395928  T
Q  222 aatgacaccaatg 234  Q
    |||||||||||||    
T  23395927 aatgacaccaatg 23395915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 11226240 - 11226132
Alignment:
Q  122 gttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaaagtatc 221  Q
    |||||||||| || ||||| ||||| |||||||| ||||||||||||||||||||| ||||| |||  |||| |||||||| |||| ||||||| ||| |    
T  11226240 gttcattttaaatgagagagaatgacgaatgaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaaggtacc 11226141  T
Q  222 aatgacacc 230  Q
    |||| ||||    
T  11226140 aatggcacc 11226132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 32832590 - 32832651
Alignment:
Q  122 gttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||||||||| ||||| |||| || |||||| ||||||||||||||||||||| |||||    
T  32832590 gttcattttagatgagagagaatgttggatgaatgattaaaataaattatttagatgagaga 32832651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 3496805 - 3496868
Alignment:
Q  152 gaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaa 215  Q
    |||| ||||||||||||||||||||| ||||| |||  |||| |||||||| |||| |||||||    
T  3496805 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaa 3496868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 15141944 - 15141881
Alignment:
Q  152 gaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaa 215  Q
    |||| ||||||||||||||||||||| ||||| |||| |||| ||| |||| |||| |||||||    
T  15141944 gaatgattaaaataaattatttagatgagagagaataagttgttaaaagagagatagacacaaa 15141881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 19037016 - 19037130
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||||||||||||||| |||| |||| ||| ||| ||||||||||||| | ||| ||||||           ||||||||||||||||||| |||||    
T  19037016 ttgggtgccatagttttttagtgccattggtgacataggttcattttagatgaaagagaatgat-----------taaaataaattatttagatgagaga 19037104  T
Q  184 taatatgttggtaagagagggataaa 209  Q
     |||  |||| |||||||| ||||||    
T  19037105 gaatgagttgttaagagagagataaa 19037130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 36562752 - 36562798
Alignment:
Q  137 gagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||| |||||||||||||| | ||||||||||||||||||| |||||    
T  36562752 gagagaatgatgaatgaatgagtaaaataaattatttagatgagaga 36562798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 13477690 - 13477747
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||| ||| ||||| |||||||||||||| |||||||||| ||||||| || |||||    
T  13477690 attttggataagagagaatgatgaatgaatgattaaaataatttatttaaatgagaga 13477747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 40204728 - 40204777
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttag 175  Q
    |||||| || ||||| ||||||  ||||||||||||||||||||||||||    
T  40204728 attttacatgagagagaatgatagatgaattattaaaataaattatttag 40204777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 69 - 225
Target Start/End: Original strand, 48914929 - 48915085
Alignment:
Q  69 aaaaatgggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaat 168  Q
    ||||| ||||| || ||||||||||||||||||| |||  |||| ||| ||| ||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  48914929 aaaaaggggaaatacttgggtgccatagtttttttgtgacattggtgacataagttcattttagatgagagagaatgatgaatgaatgattaaaataaat 48915028  T
Q  169 tatttagataagagataatatgttggtaagagagggataaacacaaaagtatcaatg 225  Q
    ||||| ||| ||||| |||  |||| |||||||| |||| |||||||||||||||||    
T  48915029 tattttgatgagagagaatgagttgttaagagagagatagacacaaaagtatcaatg 48915085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 75 - 234
Target Start/End: Original strand, 48915127 - 48915284
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattta 174  Q
    ||||| || ||||||||||||||||||| |||  |||| ||| ||| ||||||||||||| ||||||  |||||||||||| |||||||||||||||||     
T  48915127 gggaaatacttgggtgccatagtttttttgtgacattggtgacataggttcattttagatgagagaa--tgatgaatgaatgattaaaataaattatttt 48915224  T
Q  175 gataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaatg 234  Q
    ||| ||||| |||  |||| |||||||| |||| ||||||||||||||||| ||||||||    
T  48915225 gatgagagagaatgagttgttaagagagagatagacacaaaagtatcaatggcaccaatg 48915284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 48915320 - 48915467
Alignment:
Q  69 aaaaatgggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaat 168  Q
    ||||| ||||| || ||||||||||||||||||| |||  |||| ||| ||| ||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  48915320 aaaaaggggaaatacttgggtgccatagtttttttgtgacattggtgacataagttcattttagatgagagagaatgatgaatgaatgattaaaataaat 48915419  T
Q  169 tatttagataagagataatatgttggtaagagagggataaacacaaaa 216  Q
    ||||| ||| ||||| |||  |||| |||||||| |||| ||||||||    
T  48915420 tattttgatgagagagaatgagttgttaagagagagatagacacaaaa 48915467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 50539678 - 50539835
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattta 174  Q
    ||||| || |||||||||||||||| ||||||  |||| ||| ||| ||||||||||||  ||||| ||||||||||  || ||||||||||||||||||    
T  50539678 gggaaatacttgggtgccatagtttattggtgtcattggtgacataagttcattttagaagagagataatgatgaatagatgattaaaataaattattta 50539777  T
Q  175 gataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaa 232  Q
     |||| ||| |||  |||| |||||||| |||| ||||||| || ||||| |||||||    
T  50539778 aataaaagagaatgagttgttaagagagagatagacacaaaggtgtcaataacaccaa 50539835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 26478704 - 26478546
Alignment:
Q  74 tgggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattt 173  Q
    |||||| ||||||  || ||||||||||| ||| ||||| ||| | | ||| ||||||||| ||||| |||||||||||||| |||||||||||| ||||    
T  26478704 tgggaaatatttgaatgtcatagttttttagtgttattggtgacaaaggttaattttagatgagagagaatgatgaatgaataattaaaataaatcattt 26478605  T
Q  174 agataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaa 232  Q
    | || | |||||||   ||| ||| |||  |||| ||||||| ||| ||||||||||||    
T  26478604 aaatgaaagataatgaattgttaaaagaaagatagacacaaaggtaccaatgacaccaa 26478546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 19456261 - 19456417
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattta 174  Q
    ||||| || ||||||||||||| |||| ||||  |||| ||| |||  |||||||||||| ||||| ||||||||||  || ||||||||||||||||||    
T  19456261 gggaaatacttgggtgccatagctttt-ggtgtcattggtgacatagattcattttagatgagagagaatgatgaatagatgattaaaataaattattta 19456359  T
Q  175 gataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaa 232  Q
    ||| ||||| |||   ||| ||||| || |||| ||||||| ||  ||||||||||||    
T  19456360 gatgagagagaatgaattgttaagaaagagatagacacaaaggtgccaatgacaccaa 19456417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 24671249 - 24671140
Alignment:
Q  123 ttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaaagtatca 222  Q
    |||||||||||| ||||| | |||||||||||| |||||||||||||||||| || ||||| |||  || | |||||||  |||  | ||||| ||||||    
T  24671249 ttcattttagatgagagagagtgatgaatgaatgattaaaataaattatttaaatgagagagaatgagtggttaagagaaagatggaaacaaaggtatca 24671150  T
Q  223 atgacaccaa 232  Q
    ||||||||||    
T  24671149 atgacaccaa 24671140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 20717120 - 20717165
Alignment:
Q  138 agaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||    
T  20717120 agaaaatgatgaataaattattaaaataaattatttagattagaga 20717165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 27032326 - 27032415
Alignment:
Q  152 gaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaatgataccaa 241  Q
    |||| ||||||||||||||||||||| ||||| |||  |||| |||||||| |||| |||||||  || | ||||||||||||| |||||    
T  27032326 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacccatgacaccaatgacaccaa 27032415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 49177483 - 49177424
Alignment:
Q  127 ttttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataat 187  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||| | |||||||    
T  49177483 ttttagatgagagaaaatgatga-tgaatgattaaaataaattatttagatgaaagataat 49177424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 48843497 - 48843434
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgat 147  Q
    |||||||||||||||||||||||| |||| ||| ||| ||||||||||||| | ||| ||||||    
T  48843497 ttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaatgat 48843434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 5398034 - 5398080
Alignment:
Q  137 gagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||| |||||||||||||||||||||||||| ||||||||| |||||    
T  5398034 gagagaatgatgaatgaattattaaaataaactatttagatgagaga 5398080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 234
Target Start/End: Complemental strand, 27907822 - 27907685
Alignment:
Q  86 gggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagata 185  Q
    |||||||||||||||||||||  |||| ||| ||| ||||||||||||| | |||           |||| ||||||||||||||||||||| ||||| |    
T  27907822 gggtgccatagttttttggtgtcattggtgacataggttcattttagatgaaaga-----------gaatgattaaaataaattatttagatgagagaga 27907734  T
Q  186 atatgttggtaagagagggataaacacaaaagtatcaatgacaccaatg 234  Q
    ||  |||| |||||||| |||| |||||||  || | ||||||||||||    
T  27907733 atgagttgttaagagagagatagacacaaagttacctatgacaccaatg 27907685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 49177337 - 49177278
Alignment:
Q  122 gttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||||||||| |||||| ||  ||||| ||||||||||||||||||||||||| |||||    
T  49177337 gttcattttagatgagagaatat--tgaataaattattaaaataaattatttagatgagaga 49177278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 19431391 - 19431448
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||||| ||| | ||||||| |||||| ||||||||||||||||||||| |||||    
T  19431391 attttagatgagacagaatgatggatgaatgattaaaataaattatttagatgagaga 19431448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 51748685 - 51748626
Alignment:
Q  72 aatgggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcatttta 131  Q
    |||||||| || |||| ||||||||||||||||||| |||||||| |||  |||||||||    
T  51748685 aatgggaaatacttggatgccatagttttttggtgccattgatgacatagattcatttta 51748626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 17923920 - 17923859
Alignment:
Q  122 gttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||||||||  || ||||| |||| || |||||| ||||||||||||||||||||| |||||    
T  17923920 gttcattttttatgagagagaatgttggatgaataattaaaataaattatttagatgagaga 17923859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 25586916 - 25586867
Alignment:
Q  136 agagaaaatgatgaatgaattattaaaataaattatttagataagagata 185  Q
    |||||||||||| |||||||  ||||||||||||||| | ||||||||||    
T  25586916 agagaaaatgatcaatgaatatttaaaataaattattcaaataagagata 25586867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 3950295 - 3950343
Alignment:
Q  125 cattttagattagagaaaatgatgaatgaattattaaaataaattattt 173  Q
    |||||||||| ||||| ||||||  |||||| |||||||||||||||||    
T  3950295 cattttagatgagagagaatgatcgatgaatgattaaaataaattattt 3950343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 2628385 - 2628536
Alignment:
Q  74 tgggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattt 173  Q
    |||||| || |||| ||||||||||||||||||| |||| ||| ||| ||||||||||||| ||||| |||||||||| ||| ||||||||||| |||||    
T  2628385 tgggaaatacttggatgccatagttttttggtgccattggtgacataagttcattttagatgagagagaatgatgaataaatgattaaaataaactattt 2628484  T
Q  174 agataagagataatatgttggtaagagagggataaacacaaaagtatcaatg 225  Q
    |||| ||||| |||  |||| |||||||| |||| |||||||||||||||||    
T  2628485 agatgagagagaatgagttgttaagagagagatagacacaaaagtatcaatg 2628536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 81 - 232
Target Start/End: Original strand, 9488725 - 9488877
Alignment:
Q  81 tatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaa-aatgatgaatgaattattaaaataaattatttagataa 179  Q
    ||||||||||||||| |||||||||| ||||||||| ||| ||||||||||||| |||| | |||||||||||||| |||||||||||||||||||| ||    
T  9488725 tatttgggtgccataattttttggtgttattgatgacataagttcattttagatgagaggagaatgatgaatgaatgattaaaataaattatttagagaa 9488824  T
Q  180 gagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaa 232  Q
     ||  |||  |||| |||||||| |||| ||||||| ||||||||| ||||||    
T  9488825 tagggaatgagttgttaagagagagatatacacaaaggtatcaatggcaccaa 9488877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 32279250 - 32279352
Alignment:
Q  81 tatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataag 180  Q
    ||||||| || |||||||||||||||  || | ||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| || ||    
T  32279250 tatttggatgtcatagttttttggtgtcatcggtgacataggttcattttagatgagagaaaatgatgaatgaataattaaaataaattatttaaatgag 32279349  T
Q  181 aga 183  Q
    |||    
T  32279350 aga 32279352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 16876686 - 16876806
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| | |||           |||| ||||||||||||||||||||| |||||    
T  16876686 ttgggtgccatagttttttggtgccattgatgatataagttcattttagatgaaaga-----------gaatgattaaaataaattatttagatgagaga 16876774  T
Q  184 taatatgttggtaagagagggataaacacaaa 215  Q
     |||  |||| |||||||| |||| |||||||    
T  16876775 gaatgagttgttaagagagagatagacacaaa 16876806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 46425278 - 46425407
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattta 174  Q
    ||||| || |||||||||||||||||||||||| |||| ||| ||| ||||||||||||| | |||           |||| ||||||||||||||||||    
T  46425278 gggaaatacttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaaga-----------gaatgattaaaataaattattta 46425366  T
Q  175 gataagagataatatgttggtaagagagggataaacacaaa 215  Q
    ||| ||||| |||  |||| |||||||| |||| |||||||    
T  46425367 gatgagagagaatgagttgttaagagagagatagacacaaa 46425407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 34328235 - 34328163
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgat 147  Q
    ||||| || |||||||||||||||||||||||| |||| ||| ||| ||||||||||||| | ||| ||||||    
T  34328235 gggaaatacttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaatgat 34328163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 33748030 - 33747989
Alignment:
Q  142 aatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||||||||||||  |||||||||||||||||||||||||||    
T  33748030 aatgatgaatgaacaattaaaataaattatttagataagaga 33747989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 37685187 - 37685248
Alignment:
Q  122 gttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||||||||  ||||| |||| || |||||| ||||||||||||||||||||| |||||    
T  37685187 gttcattttagacgagagagaatgttggatgaatgattaaaataaattatttagatgagaga 37685248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 23185870 - 23185992
Alignment:
Q  81 tatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataag 180  Q
    |||||||||||||||||||||| |||| |||| ||| ||| ||||||||||||| | ||| ||||||           ||||||||||||||||||| ||    
T  23185870 tatttgggtgccatagttttttagtgccattggtgacata-gttcattttagatgaaagagaatgat-----------taaaataaattatttagatgag 23185957  T
Q  181 agataatatgttggtaagagagggataaacacaaa 215  Q
    ||| |||  |||| |||||||| |||| |||||||    
T  23185958 agagaatgagttgttaagagagagatagacacaaa 23185992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 18867954 - 18868017
Alignment:
Q  152 gaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaa 215  Q
    |||| ||||||||||||||||||||| ||||| |||  |||| |||||||| |||| |||||||    
T  18867954 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaa 18868017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 11369053 - 11369106
Alignment:
Q  123 ttcattttagattagagaaaatgatgaatgaattattaaaataaattatttaga 176  Q
    |||||||||||| ||||| |||| || || ||| ||||||||||||||||||||    
T  11369053 ttcattttagatgagagagaatgttggataaatgattaaaataaattatttaga 11369106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 15667938 - 15667897
Alignment:
Q  146 atgaatgaattattaaaataaattatttagataagagataat 187  Q
    |||||||||| |||||||||||||||||| || |||||||||    
T  15667938 atgaatgaatgattaaaataaattatttaaatgagagataat 15667897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 32204832 - 32204771
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataat 187  Q
    ||||||||| |||||| |||||  || ||| |||||||||||||||||| || |||||||||    
T  32204832 attttagatgagagaagatgatagataaatgattaaaataaattatttatatgagagataat 32204771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 43368497 - 43368538
Alignment:
Q  136 agagaaaatgatgaatgaattattaaaataaattatttagat 177  Q
    ||||| ||||||| |||||| |||||||||||||||||||||    
T  43368497 agagagaatgatggatgaatgattaaaataaattatttagat 43368538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 34328164 - 34328091
Alignment:
Q  157 attaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaa 232  Q
    ||||||||||||||||||||| ||||| |||  |||| |||||||  |||| |||||||  |||| ||||||||||    
T  34328164 attaaaataaattatttagatgagagagaatgagttgttaagaga--gatagacacaaagttatctatgacaccaa 34328091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 84 - 232
Target Start/End: Complemental strand, 10688740 - 10688592
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||||||| |||||||||||||   |||||||| ||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  10688740 ttgggtgctatagttttttggtatcattgatgacataagttcattttagatgagagagaatgatgaatgaatgattaaaataaattatttagatgagaga 10688641  T
Q  184 taatatgttggtaagagagggataaacacaaaagtatcaatgacaccaa 232  Q
     |||  |||| |||||||| |||| ||||||| ||| ||||| ||||||    
T  10688640 gaatgagttgttaagagagagatagacacaaaggtaccaatggcaccaa 10688592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 47548977 - 47548868
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattta 174  Q
    ||||| || ||||||||||| |||||||||||| |||| | | ||| ||||||||||||| ||||| |||| |||||| || ||||||||||||||||||    
T  47548977 gggaaatacttgggtgccatggttttttggtgccattggtaacataggttcattttagatgagagagaatgttgaatggatgattaaaataaattattta 47548878  T
Q  175 gataagagat 184  Q
    ||| ||||||    
T  47548877 gatgagagat 47548868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 232
Target Start/End: Complemental strand, 50700144 - 50700003
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||| ||| |||||||||| |||| |||| ||| ||| ||||||||||||| ||||||  |||||||| ||| ||||||||||||||||||||  |||||    
T  50700144 ttggatgctatagttttttagtgccattggtgacataagttcattttagatgagagaa--tgatgaataaatgattaaaataaattatttagacgagaga 50700047  T
Q  184 taatatgttggtaagagagggataaacacaaaagtatcaatgacaccaa 232  Q
     ||| |||   |||||||| |||  ||||||| ||| ||||||||||||    
T  50700046 gaatgtgt---taagagagagat--acacaaatgtaccaatgacaccaa 50700003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 46348376 - 46348450
Alignment:
Q  109 attgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||||||||||  ||||||||||||| ||||| |||||||||||||||||||| ||||| |||||| || |||||    
T  46348376 attgatgatattggttcattttagatgagagagaatgatgaatgaattattaagataaactatttaaatgagaga 46348450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 4037271 - 4037142
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattta 174  Q
    ||||| || |||||||||||||||||||||||| |||| ||| ||| ||||||||||||| | |||           |||| ||||||||||||||||||    
T  4037271 gggaaatacttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaaga-----------gaatgattaaaataaattattta 4037183  T
Q  175 gataagagataatatgttggtaagagagggataaacacaaa 215  Q
    ||| ||||| |||  |||| |||||||| |||| |||||||    
T  4037182 gatgagagagaatgagttgttaagagagagatagacacaaa 4037142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 49279553 - 49279464
Alignment:
Q  152 gaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaatgataccaa 241  Q
    |||| ||||||||||||||||||||| ||||| |||  |||| |||||||| |||| |||||||  || | ||||||||||||| |||||    
T  49279553 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaagttacctatgacaccaatgacaccaa 49279464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 39485467 - 39485528
Alignment:
Q  122 gttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||||||||| ||||| || | || |||||| ||||||||||||||||||||| |||||    
T  39485467 gttcattttagatgagagagaaggttggatgaatgattaaaataaattatttagatgagaga 39485528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 39488495 - 39488539
Alignment:
Q  139 gaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||    
T  39488495 gaaaatgatgaatgaataattaaaataaattatttaaaaaagaga 39488539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 11233570 - 11233507
Alignment:
Q  152 gaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaa 215  Q
    |||| ||||||||||||||||||||| ||||| |||  |||| |||||||| |||| |||||||    
T  11233570 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagatagacacaaa 11233507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 39350752 - 39350815
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgat 147  Q
    |||||||||||||||||||||||| |||| ||  ||| ||||||||||||| | ||| ||||||    
T  39350752 ttgggtgccatagttttttggtgccattggtgccataggttcattttagatgaaagagaatgat 39350815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 34272415 - 34272461
Alignment:
Q  87 ggtgccatagttttttggtgctattgatgatatatgttcattttaga 133  Q
    |||||||||||||||||||| ||||| ||| ||| ||||||||||||    
T  34272415 ggtgccatagttttttggtgttattggtgacataggttcattttaga 34272461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 42466974 - 42467008
Alignment:
Q  142 aatgatgaatgaattattaaaataaattatttaga 176  Q
    |||||||||||||| ||||||||||||||||||||    
T  42466974 aatgatgaatgaataattaaaataaattatttaga 42467008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 16278862 - 16278813
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttag 175  Q
    ||||||||| ||| | ||||||| |||||| |||||||||||||||||||    
T  16278862 attttagataagaaagaatgatggatgaataattaaaataaattatttag 16278813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 39994321 - 39994249
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgat 147  Q
    ||||| || |||||||||||||||||||||||  |||| ||| ||| ||| ||||||||| | ||| ||||||    
T  39994321 gggaaatacttgggtgccatagttttttggtgtcattggtgacataagttaattttagatgaaagagaatgat 39994249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 34928936 - 34928806
Alignment:
Q  74 tgggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattt 173  Q
    |||||| || ||||||||||||||||||| |||  |||||||| ||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||||    
T  34928936 tgggaaatacttgggtgccatagttttttagtgtcattgatgacatatgttcattttagatgagagagaatgataaatgaatgattaaaataaattattt 34928837  T
Q  174 agat--aagagataatatgttggtaagagag 202  Q
    ||||  |||||| |||| |||| ||||||||    
T  34928836 agatgaaagagagaataagttgttaagagag 34928806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 27554885 - 27554995
Alignment:
Q  87 ggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataa 186  Q
    ||||||||||||||||  ||| |||||||||||| ||| ||||||||| |||||||||||||||| ||| ||||||||| ||||||||||| ||||| ||    
T  27554885 ggtgccatagttttttactgccattgatgatataagtttattttagatgagagaaaatgatgaataaataattaaaatagattatttagatgagagaaaa 27554984  T
Q  187 tatgttggtaa 197  Q
    |||||||||||    
T  27554985 tatgttggtaa 27554995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 226
Target Start/End: Complemental strand, 22658962 - 22658818
Alignment:
Q  81 tatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataag 180  Q
    ||||| ||||||||||||||||||||| |||| | | ||| ||||||||||||| | ||| |||||||||||||| |||||||||||||||||| || |     
T  22658962 tatttaggtgccatagttttttggtgcgattggtaacataagttcattttagatgaaagagaatgatgaatgaatgattaaaataaattatttaaatgaa 22658863  T
Q  181 agataatatgttggtaagagagggataaacacaaaagtatcaatga 226  Q
    | | | ||||||| ||| |||| |||||| ||||||||||||||||    
T  22658862 aaaaagtatgttgctaacagagagataaa-acaaaagtatcaatga 22658818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 2651745 - 2651618
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||||||||||||||||||||||| |||| ||| ||| |||||||||||||           |||||||||| ||||||||||||||||||||| ||| |    
T  2651745 ttgggtgccatagttttttggtgccattggtgacataagttcattttagatgt---------atgaatgaatgattaaaataaattatttagatgagata 2651655  T
Q  184 taatatgttggtaagagagggataaacacaaaagtat 220  Q
     |||||||||||||||||| |||||||||||||||||    
T  2651654 gaatatgttggtaagagagagataaacacaaaagtat 2651618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 14151909 - 14151993
Alignment:
Q  92 catagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattatttaga 176  Q
    |||||||||||| ||  |||||||| ||| ||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||    
T  14151909 catagttttttgatgtcattgatgacataggttcattttagatgagagataataatgaatgaatgattaaaataaattatttaga 14151993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 37515524 - 37515652
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattta 174  Q
    ||||| ||| ||||||||||||||||| |||| ||||||||| ||| ||||||||||||| | |||           |||| ||||||||||||||||||    
T  37515524 gggaaatatctgggtgccatagttttt-ggtgttattgatgacataagttcattttagataaaaga-----------gaatgattaaaataaattattta 37515611  T
Q  175 gataagagataatatgttggtaagagagggataaacacaaa 215  Q
    ||| | |||||||  |||| |||||||| |||| |||||||    
T  37515612 gatgatagataatgagttgttaagagagagatagacacaaa 37515652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 18267851 - 18267916
Alignment:
Q  122 gttcattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataat 187  Q
    |||| |||||||| ||||| ||||||| || ||| |||||||||||||||||| |||| |||||||    
T  18267851 gttcgttttagataagagagaatgatggattaataattaaaataaattatttaaataaaagataat 18267916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 33953218 - 33953161
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||||| ||||| |||| || |||||| ||||||||||||||||||||| |||||    
T  33953218 attttagatgagagagaatggtggatgaataattaaaataaattatttagatgagaga 33953161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 37480412 - 37480340
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgat 147  Q
    ||||| || |||||||| ||||||||||||||  |||| ||| ||| ||||||||||||| | ||||||||||    
T  37480412 gggaaatacttgggtgctatagttttttggtgtcattggtgacataagttcattttagatgaaagaaaatgat 37480340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 18623597 - 18623644
Alignment:
Q  136 agagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||| ||||||  |||||| |||||||||||||||||||||||||||    
T  18623597 agagagaatgatagatgaatgattaaaataaattatttagataagaga 18623644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 22473667 - 22473601
Alignment:
Q  73 atgggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagaga 140  Q
    ||||||| || ||||||||||||||||||||| || | || ||| ||||||||||||||||| |||||    
T  22473667 atgggaaatacttgggtgccatagttttttggcgcca-tggtgacatatgttcattttagatgagaga 22473601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 22653571 - 22653513
Alignment:
Q  125 cattttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    |||||||||| ||| | ||| ||| |||||| ||||||||| |||||||||||||||||    
T  22653571 cattttagatgagaaagaataatggatgaatgattaaaatagattatttagataagaga 22653513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 19824674 - 19824617
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttagataagaga 183  Q
    ||||||||| ||||| |||| |  |||||| ||||||||||||||||||||| |||||    
T  19824674 attttagatgagagagaatgttagatgaatgattaaaataaattatttagatgagaga 19824617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 14281810 - 14281862
Alignment:
Q  126 attttagattagagaaaatgatgaatgaat-tattaaaataaattatttagat 177  Q
    ||||||||| ||||| ||||||  |||||| ||||||||||||||||||||||    
T  14281810 attttagatgagagagaatgatagatgaatgtattaaaataaattatttagat 14281862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 9928391 - 9928262
Alignment:
Q  75 gggaagtatttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgatgaatgaattattaaaataaattattta 174  Q
    ||||| || |||||||||||||||||||||||| |||| ||| ||| ||||||||||||| | |||           |||| ||||||||||||||||||    
T  9928391 gggaaatacttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaaga-----------gaatgattaaaataaattattta 9928303  T
Q  175 gataagagataatatgttggtaagagagggataaacacaaa 215  Q
    ||| ||||| |||  |||| |||||||| |||| |||||||    
T  9928302 gatgagagagaatgagttgttaagagagagatagacacaaa 9928262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 26847230 - 26847168
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttagataagagataata 188  Q
    ||||||||| ||||| ||||||  |||||| | ||||||||||||||||||||||||||||||    
T  26847230 attttagatgagagagaatgatagatgaatgagtaaaataaattatttagataagagataata 26847168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 457739 - 457683
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattatttagataagag 182  Q
    ||||||||| ||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  457739 attttagatgagagagaatgatggatgaatgattaaaataaattatttagatgagag 457683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 233
Target Start/End: Complemental strand, 31743922 - 31743843
Alignment:
Q  152 gaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaat 233  Q
    |||| |||||||||||||||||||||  |||| |||| |||| ||| |||| |||| |||||||| |||| |||||||||||    
T  31743922 gaatgattaaaataaattatttagat--gagagaataagttgttaaaagagagatagacacaaaactatctatgacaccaat 31743843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 22469818 - 22469757
Alignment:
Q  86 gggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgat 147  Q
    |||||||||||||||||||||| |||| ||| ||| ||||||||||||| | ||| ||||||    
T  22469818 gggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaatgat 22469757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 24226148 - 24226101
Alignment:
Q  126 attttagattagagaaaatgatgaatgaattattaaaataaattattt 173  Q
    ||||||||| ||||||||||||  |||||| |||||||||||||||||    
T  24226148 attttagatgagagaaaatgatagatgaatgattaaaataaattattt 24226101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 9549436 - 9549369
Alignment:
Q  146 atgaatgaattattaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaa 215  Q
    |||||||||| |||||||||||||||||| || ||||| |||  |||| |||||||  ||||||||||||    
T  9549436 atgaatgaatgattaaaataaattatttaaattagagagaatgagttgttaagaga--gataaacacaaa 9549369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 7506696 - 7506639
Alignment:
Q  152 gaattattaaaataaattatttagataagagataatatgttggtaagagagggataaa 209  Q
    |||| ||||||||||||||||||||| ||||| |||  |||| |||||||| ||||||    
T  7506696 gaatgattaaaataaattatttagatgagagagaatgagttgttaagagagagataaa 7506639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 22469758 - 22469674
Alignment:
Q  157 attaaaataaattatttagataagagataatatgttggtaagagagggataaacacaaaagtatcaatgacaccaatgataccaa 241  Q
    ||||||||||||||||||||| ||||| |||  |||| ||||| || |||| |||||||  || | ||| ||||||||| |||||    
T  22469758 attaaaataaattatttagatgagagagaatgagttgttaagaaagagatagacacaaagttacctatggcaccaatgacaccaa 22469674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 15212 - 15149
Alignment:
Q  84 ttgggtgccatagttttttggtgctattgatgatatatgttcattttagattagagaaaatgat 147  Q
    |||||||||||| ||||||||||| |||| ||| ||||||||||||||||| | ||| ||||||    
T  15212 ttgggtgccataattttttggtgccattggtgacatatgttcattttagatgaaagataatgat 15149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 20355 - 20314
Alignment:
Q  146 atgaatgaattattaaaataaattatttagataagagataat 187  Q
    |||||||||| ||||||||||||||||||||| |||||||||    
T  20355 atgaatgaatgattaaaataaattatttagatgagagataat 20314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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