View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_14 (Length: 447)
Name: NF4908_high_14
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Original strand, 38959008 - 38959408
Alignment:
| Q |
8 |
attattctatggcaaatatcagaacatctggttggctaaaataagagaccgtattgatagacggctgatattttcacttccaaacaaacatttttcttta |
107 |
Q |
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| T |
38959008 |
attattctatgacaaatatcagaacatctggttggctaaaataagagaccgtattaatagacggctgatattttcacttccaaacaaacatttttcttta |
38959107 |
T |
|
| Q |
108 |
agactaccaaaatatcaaggttttattatgactattaa-ctaatgatacaaaatatacaagaatatttgcatgactaaattcaagtgagctagaaaggtt |
206 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38959108 |
agactaccaaaatatcaagattttattatgactattaaactaatgatacaaaatatacaagaatatttgcatgactaaattcaagtgagctagaaaggtt |
38959207 |
T |
|
| Q |
207 |
tctaacaaaaatgaaatttctcttgaaataattagaaagtaataaaaataatatcttaagatgggtccaacgtggaagataacaagaggttgtgaaaaga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38959208 |
tctaacaaaaatgaaatttctcttgaaataattagaaagtaataaaaataatatcttaagatgggtccaacgtggaagataacaagaggttgtgaaaaga |
38959307 |
T |
|
| Q |
307 |
taagaagtatgcgtccagaaatattcaccaacattggttatatatcccgccattacattccctaaccccattaaattaaacctcatctttatcacaccaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38959308 |
taagaagtatgcgtccagaaatattcaccaacattggttatatatcccgccattacattccctaaccccattaaattaaacctcatctttatcacaccaa |
38959407 |
T |
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| Q |
407 |
c |
407 |
Q |
| |
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| T |
38959408 |
c |
38959408 |
T |
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