View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4908_high_15 (Length: 431)
Name: NF4908_high_15
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Original strand, 36375091 - 36375485
Alignment:
| Q |
13 |
tcatcagaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375091 |
tcatcagaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagc |
36375190 |
T |
|
| Q |
113 |
ctctttatattcatttcaatcgcattattaaaaaatggtgcaaaaataatgaaatgggatttaagagagaaatatttcagggttgcttggttaatggaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375191 |
ctctttatattcatttcaatcgcattattaaaaaatggtgcaaaaataatgaaatgggatttaagagagaaatatttcagggttgcttggttaatggaca |
36375290 |
T |
|
| Q |
213 |
agagatagcagtgaaaagattgtcgaaaaattcaggtcaaggaaaagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaatcta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375291 |
agagatagcagtgaaaagattgtcgaaaaattcaggtcaaggaaaagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaatcta |
36375390 |
T |
|
| Q |
313 |
gtgaggttgctaggttgttgctttgaaaaggaagaaaggatgctggtttatgaatacttaccaaacaaaagcctagatttctttatatttggtat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375391 |
gtgaggttgctaggttgttgctttgaaaaggaagaaaggatgctggtttatgaatacttaccaaacaaaagcctagatttctttatatttggtat |
36375485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 408
Target Start/End: Original strand, 36428197 - 36428592
Alignment:
| Q |
13 |
tcatcagaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagc |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36428197 |
tcatgagaataagcttggacaaggtggatttggttctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagc |
36428296 |
T |
|
| Q |
113 |
ctctttatattcatttcaatcgcattattaaaaaatggtgcaaaaataatgaaatgggatttaagagagaaatatttcagggttgcttggttaatggaca |
212 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
36428297 |
ctctttatattcatttcaatcgcatcatttaaaaatggtgcaaaaataatgaaatgggatttaagagacaaacatttcagggttgcttggttagtggaca |
36428396 |
T |
|
| Q |
213 |
agagatagcagtgaaaagattgtcgaaaaattcaggtcaaggaaaagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaatcta |
312 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36428397 |
agagatagcagtgaaaagattgtccagagattcaggtcaaggcaaagaagagtttaagaatgaaattaaacttttagttaaactccaacacagaaatcta |
36428496 |
T |
|
| Q |
313 |
gtgaggttgctaggttgttgctttgaaaaggaagaaaggatgctggtttatgaatacttaccaaacaaaagcctagatttctttatatttggtatg |
408 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36428497 |
gtgaggttgctcggttgttgctttgaaaaagaagaaaggatgctagtttatgaatatctaccaaacaaaagcctagacttctttatatttggtatg |
36428592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 36418222 - 36418612
Alignment:
| Q |
18 |
agaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagcctctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36418222 |
agaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttagcctctt |
36418321 |
T |
|
| Q |
118 |
tatattcatttcaatcgcattattaaaaaatggtgcaaaaataatgaaatgggatttaagagagaaatatttcagggttgcttggttaatggacaagaga |
217 |
Q |
| |
|
||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| | |||| ||||||||||||| |
|
|
| T |
36418322 |
tatattcatttcacttgcattattaaaaaatagtgcaaaaataatgaaatgggatttaagagacaaacatttcagggctttttggaaaatggacaagaga |
36418421 |
T |
|
| Q |
218 |
tagcagtgaaaagattgtcgaaaaattcaggtcaaggaaaagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaatctagtgag |
317 |
Q |
| |
|
||||||||||||||||||| | | |||| |||||||| |||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36418422 |
tagcagtgaaaagattgtccagagattctggtcaaggcaaagaagagtttaagaatgaaattaaacttttagttaaactccaacacagaaatctagtgag |
36418521 |
T |
|
| Q |
318 |
gttgctaggttgttgctttgaaaaggaagaaaggatgctggtttatgaatacttaccaaacaaaagcctagatttctttatatttggtatg |
408 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| ||||| |||||| || |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
36418522 |
gttgctcggttgttgctttgaaaaagaagaaaggatgctagtttacgaatacctatcaaacaaaagcctagacttctttatattcggtatg |
36418612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 36388810 - 36389190
Alignment:
| Q |
13 |
tcatcagaataagcttggacaaggtggatttggctctgtctataaggtaa----gtgaaactctacattgagatactcatgcaaaaagtgacaatatcct |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| | ||| |||||| | ||||| |
|
|
| T |
36388810 |
tcatgagaataagcttggacaaggtggatttggctctgtctataaggtaattaagtgcaactctacattgagctactgaatcaagaagtgaatacatcct |
36388909 |
T |
|
| Q |
109 |
tagcctctttatattcatttcaatcgcattattaaaaaatggtgcaaaaataatgaaatgggatttaagagagaaatatttcagggttgcttggttaatg |
208 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36388910 |
tcacctctttatattcatttcaatagcattataaaaaaatgatgcaagaataatgaaatgggatttaagagagaaatatttcagggtagcttggttaatg |
36389009 |
T |
|
| Q |
209 |
gacaagagatagcagtgaaaagattgtcgaaaaattcaggtcaaggaaaagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36389010 |
gacaagagatagcagtgaaaagattgtcgcaaaattcaggtcaaggaaaagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaa |
36389109 |
T |
|
| Q |
309 |
tctagtgaggttgctaggttgttgctttgaaaaggaagaaaggatgctggtttatgaatacttaccaaacaaaagcctaga |
389 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36389110 |
tctagtaaggttgctcagttgttgctttgaaaaagaagaaaggatgctagtttatgaatacttaccaaacaaaagcctaga |
36389190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 408
Target Start/End: Original strand, 36406131 - 36406527
Alignment:
| Q |
12 |
atcatcagaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtgacaatatccttag |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| || |||| |||||| ||||||||| ||| | |
|
|
| T |
36406131 |
atcataagaataagcttggacaaggtggatttggctctgtctacaaggtgagtgaaactctacattaagctactgatgcaagaagtgacaacatcagtca |
36406230 |
T |
|
| Q |
112 |
cctctttatattcatttcaatcgcattattaaaaaatggtgcaaaaataatgaaatgggatttaagagagaaatatttcagggttgcttggttaatggac |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36406231 |
cctctttatattcatttcaatcacattattaaaaaatggtgcaaaaataatgaaatatgatttaagagataaatatttcagggttgcttggttaatggac |
36406330 |
T |
|
| Q |
212 |
aagagatagcagtgaaaagattgtcgaaaaattcaggtcaaggaaaagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaatct |
311 |
Q |
| |
|
||||||| ||||| ||||||||||| | | |||| |||||||| |||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
36406331 |
aagagattgcagttaaaagattgtccagagattctggtcaaggcaaagtagagtttaaaaatgaaattacacttttagttaaactccaacacagaaatct |
36406430 |
T |
|
| Q |
312 |
agtgaggttgctaggttgttgctttgaaaaggaagaaaggatgctggtttatgaatacttaccaaacaaaagcctagatttctttatatttggtatg |
408 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
36406431 |
agtgaggttgctcggttgttgctttgaaaaagaagaaaggatgttagtttatgaatacctaccaaacaaaagcctagacttctttatattcggtatg |
36406527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 36369853 - 36370239
Alignment:
| Q |
13 |
tcatcagaataagcttggacaaggtggatttggctctgtctataaggtaa----gtgaaactctacattgagatactcatgcaaaaagtgacaatatcct |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| || ||| |||||| || ||||| |
|
|
| T |
36369853 |
tcatgagaataagcttggacaaggtggatttggctctgtctataaggtaattaagtgcaactctacattgagctactgattcaagaagtgaaaacatcct |
36369952 |
T |
|
| Q |
109 |
tagcctctttatattcatttcaatcgcattattaaaaaatgg-tgcaaaaataatgaaatgggatttaagagagaaatatttcagggttgcttggttaat |
207 |
Q |
| |
|
| |||||||||||||||||||| |||||| | ||||| |||||||||| ||| || | ||| || ||| |||||||||||||||||||| | |
|
|
| T |
36369953 |
tcatctctttatattcatttcaattacattat--attaatggctgcaaaaatagtgatattg-----aagtgataaaaatttcagggttgcttggttagt |
36370045 |
T |
|
| Q |
208 |
ggacaagagatagcagtgaaaagattgtcgaaaaattcaggtcaaggaaaagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaa |
307 |
Q |
| |
|
||| ||||||| ||||||||||||||||| | | ||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||| |
|
|
| T |
36370046 |
ggaaaagagattgcagtgaaaagattgtccagagattcaggtcaaggcaaagaagagtttaaaaatgaagttaaacttttagtcaaacttcaacacagaa |
36370145 |
T |
|
| Q |
308 |
atctagtgaggttgctaggttgttgctttgaaaaggaagaaaggatgctggtttatgaatacttaccaaacaaaagcctagatttctttatatt |
401 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36370146 |
atctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtttatgaatacttaccaaacaaaagcctagacttctttatatt |
36370239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 143 - 408
Target Start/End: Original strand, 36434827 - 36435090
Alignment:
| Q |
143 |
aaaaatggtgcaaaaataatgaaatgggatttaagagagaaatatttcagggttgcttggttaatggacaagagatagcagtgaaaagattgtcgaaaaa |
242 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||||| |||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36434827 |
aaaaatgatgcaaaaatagtgaaatgggatctaagatagaaat--tgcagggttgcttggctaatggacaagagatagcagtgaaaagattgtccaaaaa |
36434924 |
T |
|
| Q |
243 |
ttcaggtcaaggaaaagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaatctagtgaggttgctaggttgttgctttgaaaag |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36434925 |
ttcaggtcaaggaaaagaagagtttaaaactgaagttacgcttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaa |
36435024 |
T |
|
| Q |
343 |
gaagaaaggatgctggtttatgaatacttaccaaacaaaagcctagatttctttatatttggtatg |
408 |
Q |
| |
|
|||||||||||| | |||||||||||| |||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
36435025 |
gaagaaaggatgttagtttatgaatacctaccaaacaaaagcctggacttctttatattcggtatg |
36435090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 151 - 408
Target Start/End: Original strand, 36398499 - 36398756
Alignment:
| Q |
151 |
tgcaaaaataatgaaatgggatttaagagagaaatatttcagggttgcttggttaatggacaagagatagcagtgaaaagattgtcgaaaaattcaggtc |
250 |
Q |
| |
|
||||||||| |||| || |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
36398499 |
tgcaaaaattatgacataggatttaagagataaaaattgcagggttgcttggttaatggacaagagatagcagtgaaaagattgtccaaagaatcaggtc |
36398598 |
T |
|
| Q |
251 |
aaggaaaagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaatctagtgaggttgctaggttgttgctttgaaaaggaagaaag |
350 |
Q |
| |
|
|||| |||| ||||||||||| |||| ||| |||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
36398599 |
aaggcaaagtagagtttaaaaatgaaattacacttttagttaagctccagcacagaaatctagtaaggttgcttggttgttgcttcgaaaaagaagaaag |
36398698 |
T |
|
| Q |
351 |
gatgctggtttatgaatacttaccaaacaaaagcctagatttctttatatttggtatg |
408 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
36398699 |
aatgctagtttatgaatacctaccaaacaaaagcctagacttctttatattcggtatg |
36398756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 36434726 - 36434812
Alignment:
| Q |
13 |
tcatcagaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgcaaaaagtga |
99 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| ||||| |||||| |
|
|
| T |
36434726 |
tcatgagaataagcttggacaaggtggatttggctctgtctataaggtaagtgagaccctacattgagctactattgcaagaagtga |
36434812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 36398398 - 36398476
Alignment:
| Q |
13 |
tcatcagaataagcttggacaaggtggatttggctctgtctataaggtaagtgaaactctacattgagatactcatgca |
91 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||| || |||||||||||| |||||||||| |
|
|
| T |
36398398 |
tcatcagaataagcttgggaaaggtggatttggctctgtttataaggtaagtaaacctctacattgagctactcatgca |
36398476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 408
Target Start/End: Original strand, 47640295 - 47640357
Alignment:
| Q |
346 |
gaaaggatgctggtttatgaatacttaccaaacaaaagcctagatttctttatatttggtatg |
408 |
Q |
| |
|
|||| |||||| |||||||||||| |||||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
47640295 |
gaaaagatgcttgtttatgaatacataccaaacaaaagcctcgatcactttctatttggtatg |
47640357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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