View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_19 (Length: 400)
Name: NF4908_high_19
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 40407300 - 40407088
Alignment:
| Q |
1 |
aatacgattacaaaactcatttccaatacgtttttgcataaacttagtccgagtacattttacgtatggaaaatttggtcaaatttaattatttataaga |
100 |
Q |
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| T |
40407300 |
aatacgattacaaaactcatttccaatacgtttttgcataaacttagtccgagtacatattacgtatggaaaatttggtcaaatttaattatttataaga |
40407201 |
T |
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| Q |
101 |
aacnnnnnnnggaaagaaatgctagtatgcaaataaatttaattaatgccaataacgtaggtggcacgtcgtgttactggtgtggtgcggtgacaacgtc |
200 |
Q |
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| T |
40407200 |
aacaaaaaaaggaaagaaatgctagtgtgcaaataaatttaattaatgccaataacgtaggtggcacgtcgtgttactggtgtggtgcggtgacaacatc |
40407101 |
T |
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| Q |
201 |
gcgttcagatccg |
213 |
Q |
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| T |
40407100 |
gcgttcagatccg |
40407088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 40407035 - 40406966
Alignment:
| Q |
256 |
attcacccaactccaatttcagaaacaaacagattccaacattcacttccc-aaatcacacaatgtcgaa |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40407035 |
attcacccaactccaatttcagaaacaaacagattccaacattcacttcccaaaatcacacaatgtcgaa |
40406966 |
T |
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