View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4908_high_21 (Length: 395)
Name: NF4908_high_21
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_21 |
 | |
|
| [»] scaffold0229 (1 HSPs) |
| | |
|
| [»] scaffold0245 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0229 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 259 - 623
Alignment:
| Q |
13 |
catcatgttggtagagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggccagttgaagaggctatggggtttgctcaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
259 |
catcatgttggtagagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggccagttgaagaggctatggggtttgctcaga |
358 |
T |
|
| Q |
113 |
tggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaataggttaagagaacttgctgaaaataa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
359 |
tggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaataggttaagagaacttgctgaaaataa |
458 |
T |
|
| Q |
213 |
tgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttctttctctacttattcattcttgca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
459 |
tgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttctttctctacttattcattcttgca |
558 |
T |
|
| Q |
313 |
ttgcataaccactgtttcagatgacatagataatatcnnnnnnncttcaataaagactttcttgt |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
559 |
ttgcataaccactgtttcagatgacatagataatatcaaaaaaacttcaataaagactttcttgt |
623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 1274251 - 1274615
Alignment:
| Q |
13 |
catcatgttggtagagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggccagttgaagaggctatggggtttgctcaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1274251 |
catcatgttggtagagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggccagttgaagaggctatggggtttgctcaga |
1274350 |
T |
|
| Q |
113 |
tggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaataggttaagagaacttgctgaaaataa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1274351 |
tggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaataggttaagagaacttgctgaaaataa |
1274450 |
T |
|
| Q |
213 |
tgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttctttctctacttattcattcttgca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1274451 |
tgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttctttctctacttattcattcttgca |
1274550 |
T |
|
| Q |
313 |
ttgcataaccactgtttcagatgacatagataatatcnnnnnnncttcaataaagactttcttgt |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1274551 |
ttgcataaccactgtttcagatgacatagataatatcaaaaaaacttcaataaagactttcttgt |
1274615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 89 - 377
Target Start/End: Original strand, 1 - 289
Alignment:
| Q |
89 |
aagaggctatggggtttgctcagatggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaatag |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
aagaggctatggggtttgctcagatggctataaggtgtgctgagttaaggaggaaagatagacctgatcttggtaaagagattatgcctgaacttaatag |
100 |
T |
|
| Q |
189 |
gttaagagaacttgctgaaaataatgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttc |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101 |
gttaagagaacttgctgaaaataatgatcaccattatatgtttagtggatttacaagtccttctactcagagccaagtctctcttcagatggtatgtttc |
200 |
T |
|
| Q |
289 |
tttctctacttattcattcttgcattgcataaccactgtttcagatgacatagataatatcnnnnnnncttcaataaagactttcttgt |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
201 |
tttctctacttattcattcttgcattgcataaccactgtttcagatgacatagataatatcaaaaaaacttcaataaagactttcttgt |
289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 50439244 - 50439185
Alignment:
| Q |
25 |
agagctattgagaagggaacatttagtgagatgttggatccaagactgacagattggcca |
84 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||| | | |||| ||||||||| |
|
|
| T |
50439244 |
agagctattgagaaaggaacatttactgagatgttggatcctacagtgactgattggcca |
50439185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University