View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_23 (Length: 382)
Name: NF4908_high_23
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 374
Target Start/End: Complemental strand, 43109390 - 43109019
Alignment:
| Q |
13 |
aacaagcatatacaattaatatttttcacgatataacaaa-catgtatttccaccnnnnnnnttataagattttgatgtttaggtgtaataattaggtat |
111 |
Q |
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| T |
43109390 |
aacaagcatatacaattaatatttttcacgatataacaaaacatgtatttccaccaaaaaaattataagattttgatgtttaggtgtaataattaggtat |
43109291 |
T |
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| Q |
112 |
gttattcgaacaactatgttagaacaatttattaaattaaacatctaaaaatatgtataagataatatatgcatcgacacaaaaactaaaataatagagc |
211 |
Q |
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| T |
43109290 |
gtcatttgaacaactatgttagaacaatttattaaattaaacatctaaaaatatgtataagataatgtatgcatcgacacaaaaaccaaaacaatagagc |
43109191 |
T |
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| Q |
212 |
gaaggtaaaatacaataaaagtatgaagtgagagttatccttaaacatat---------tttagtttgatccaaaaattaagtatatatcaaaatttact |
302 |
Q |
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| T |
43109190 |
aagggtaaaatataataaaagtatgaagtgagaattgtccttaaatttgtttacttgtcttttgtttgatccaaaaattaagtatatgtcaaaatttact |
43109091 |
T |
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| Q |
303 |
tatcttttctttgaatcccaaattatcaaagctcattctctgtgcgttttctatatgttttcttcctttgct |
374 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43109090 |
tatcttttctttgaatcccaaattaacaaagctcattctctgtgcgttttctatatgttttcttcctttgct |
43109019 |
T |
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