View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_25 (Length: 363)
Name: NF4908_high_25
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_25 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 14767121 - 14766786
Alignment:
| Q |
19 |
ttgaaattagttggggaaaagctatatatggtggagcagctaagggaggagttggtgctataactggtgttgctagcttgtttatgccttgcaaaaatgc |
118 |
Q |
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| T |
14767121 |
ttgaatttggttggggaaaagctgtatatggtggaccagctaaaggaggagttggtgctatacctggtgttgctagcttttatatacctttcaaaaatgc |
14767022 |
T |
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| Q |
119 |
taaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaagagttagatagtgtgcttaagaacaacatcaac |
218 |
Q |
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| T |
14767021 |
taaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaagagttagatagtgtgcttaagaacaacatcaac |
14766922 |
T |
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| Q |
219 |
caacctactattggtggtccaaaacctagtttcattatttcttccttgtagaccttaaactaatgtttgtttcaatttcctttgctatgattggtgtgag |
318 |
Q |
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| T |
14766921 |
caacctactattggtggtccaaaacctagtttcattatttcttccttgtagaccttaaactaatgtttgtttcaatttcctttgctatgattggtgtgag |
14766822 |
T |
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| Q |
319 |
actatatataatcacgatggtcaattttagtataat |
354 |
Q |
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| T |
14766821 |
actatatataatcacgatggtcaattttagtataat |
14766786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 111 - 328
Target Start/End: Complemental strand, 14873236 - 14873019
Alignment:
| Q |
111 |
aaaaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaagagttagatagtgtgcttaagaaca |
210 |
Q |
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| T |
14873236 |
aaaaatgctaaaggaatagaaggtttggttataccagtttgtttgccaactaaagccatggagaggttcattaaagagttggatggtgtgcttaagaaca |
14873137 |
T |
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| Q |
211 |
acatcaaccaacctactattggtggtccaaaacctagtttcattatttcttccttgtagaccttaaactaatgtttgtttcaatttcctttgctatgatt |
310 |
Q |
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| T |
14873136 |
aaattaaccaacctactatgggtggtccaaaacctagattcataatttctcccttgtaaaccttgaactaatgttcgtatgaatttcctttgctatgata |
14873037 |
T |
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| Q |
311 |
ggtgtgagactatatata |
328 |
Q |
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| T |
14873036 |
tgtgtgagactatatata |
14873019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 14877965 - 14877850
Alignment:
| Q |
113 |
aaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaagagttagatagtgtgcttaagaacaac |
212 |
Q |
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| T |
14877965 |
aaatgataaaggagagaaaggtttggttataccagtttttttgccaactcaagtcatggagaggttggttaaagagttggatagtgttcttaagaacaac |
14877866 |
T |
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| Q |
213 |
atcaaccaacctacta |
228 |
Q |
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| T |
14877865 |
attaaccagcctacta |
14877850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 14786195 - 14786016
Alignment:
| Q |
28 |
gttggggaaaagctatatatggtggagcagctaagggaggagttggtgctataactggtgttgctagcttgtttatgccttgcaaaaatgctaaaggaga |
127 |
Q |
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||||||| ||| | || ||||| ||| |||||| |||| || ||||| ||| ||||| |||||||||| ||| |||| |||||||||||||||||| |
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| T |
14786195 |
gttgggggaaacccatctatggaggaccagctagaggagcagatggtgatattcctggtcttgctagctttcatatacctttcaaaaatgctaaaggaga |
14786096 |
T |
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| Q |
128 |
ggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaagagttagatagtgtgcttaaga |
207 |
Q |
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| T |
14786095 |
ggaaggtttggttataccattttattttccaaatcaagtcatggagaggtttgttaaagaaatggatagtgtgcttaaga |
14786016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 14759767 - 14759852
Alignment:
| Q |
105 |
ccttgcaaaaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaagagtt |
190 |
Q |
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| T |
14759767 |
cctttcaaaaatgctaaaggagaagaaggtttggttataccgtttttcttgcctgctcaagtcatggagaggttggttaaagagtt |
14759852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 276
Target Start/End: Complemental strand, 14872310 - 14872226
Alignment:
| Q |
192 |
gatagtgtgcttaagaacaacatcaaccaacctactattggtggtccaaaacctagtttcattatttcttccttgtagaccttaa |
276 |
Q |
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| T |
14872310 |
gataatgtgcttaagaacaacattagccaacctactaaggatggtccgaaacctagtctcgttatttcttcattgtaaaccttaa |
14872226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 275
Target Start/End: Complemental strand, 84027 - 83863
Alignment:
| Q |
111 |
aaaaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaagagttagatagtgtgcttaagaaca |
210 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||| ||| ||| |||||| ||| |||| ||| ||||||||||| |||| || |||||||||| |
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| T |
84027 |
aaaaatgctaaaggagaggaaggttttgttataccagttttttttccaactcaagtcatcgagaggttggttaaagagttggataaagttcttaagaaca |
83928 |
T |
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| Q |
211 |
acatcaaccaacctactattggtggtccaaaacctagtttcattatttcttccttgtagacctta |
275 |
Q |
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| T |
83927 |
acattaactcgcctactatgggtgatagaaaatctggaatcattaattcttcgttgtagtcctta |
83863 |
T |
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