View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_28 (Length: 358)
Name: NF4908_high_28
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 240 - 341
Target Start/End: Complemental strand, 40992141 - 40992040
Alignment:
| Q |
240 |
caggtgctacgtgatcgcttgaaaaatattcttcaagaggacgagatttttgtttgtgacatgacatctaggaagaggaatcgtgttgctgatgtaggtt |
339 |
Q |
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| T |
40992141 |
caggtgctacgtgatcgcttgaaaaatattcttcaagaggacgagatttttgtttgtgacatgacatctaggaagaggaatcgtgttgctgatgtaggtt |
40992042 |
T |
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| Q |
340 |
tt |
341 |
Q |
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| T |
40992041 |
tt |
40992040 |
T |
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Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 40992371 - 40992284
Alignment:
| Q |
10 |
aagaatatcaacgattaagaagaaagagtaacgttgttgaacatactcacagaacaagtaagctaatgttgtttgaatcatgcatagg |
97 |
Q |
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| T |
40992371 |
aagaaaatcaacgattaagaagaaagagtaacgttgttgaacatactcacagaacaagtaagctaatgttgtttgaatcatgcatagg |
40992284 |
T |
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