View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4908_high_3 (Length: 632)
Name: NF4908_high_3
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 17 - 623
Target Start/End: Original strand, 31127495 - 31128107
Alignment:
| Q |
17 |
aatacaaatatataacatgtcattgactaattggatgattattatatatctnnnnnnntcatgagtactaccatattcaccactaaaaatttgattttta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31127495 |
aatacaaatatataacatgtcattgactaattggatgattattatatatctaaaaaaatcatgagtactaccatattcaccactaaaaatttgattttta |
31127594 |
T |
|
| Q |
117 |
aataagttaatacaaaaatatgatataattagatcatatgtacaaacacaaccaaattttgggagtaacaatgtattcacnnnnnnnnnnnnnnntgtat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31127595 |
aataagttaatacaaaaatatgatataattagatcatatgtacaaacacaaccaaattttgggagtaacaatgtattcacaaaataggaaaaaa-tgtat |
31127693 |
T |
|
| Q |
217 |
tttagcttaaaagactatcctatttttctcccataataaaatatnnnnnnnnctgtacggtttttactactaaagaacacttgaggttttggccatttct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31127694 |
tttagcttaaaagactatcctatttttctcccataataaaatataaaaaaaactgtacggtttttactactaaagaacacttgaggttttggccatttct |
31127793 |
T |
|
| Q |
317 |
---tcttcttcttcctctctccagcctaaagccctaaacaatgaaaccatagttcatccatcacttccattaacccaaacttattcctccatcttttctt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31127794 |
tcttcttcttcttcctctctccagcctaaagccctaaacaatgaaaccatagttcatccatcacttccattaacccaaactcattcctccatcttttctt |
31127893 |
T |
|
| Q |
414 |
ttaaccagaaaacattggagacctttgtgatgttaaaagctcttcaaaaggtaacaactttcactctttttacactatataaaaatttgannnnnnnnnn |
513 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31127894 |
ttaaccaggaaacattggagacctttgtgatgttaaaagctcttcaaaaggtaacaactttcactctttttacactatataaaaatttga-ttttttttt |
31127992 |
T |
|
| Q |
514 |
ncatcaaaaaacttattttgcttaatggagagtgctacttatagtgttctttgaaacccttttcttgtttttggtacat-----ttcccacccaactttt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
31127993 |
tcatcaaaaaacttattttgcttaatggagagtgctacttatagtgttctttgaaacccttttcttgtttttggtacatttccgttccgacccaactttt |
31128092 |
T |
|
| Q |
609 |
ggaatcaatattctt |
623 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
31128093 |
ggaatcaatattctt |
31128107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 28957971 - 28958003
Alignment:
| Q |
105 |
atttgatttttaaataagttaatacaaaaatat |
137 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
28957971 |
atttgatttttaaataaattaatacaaaaatat |
28958003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University