View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_31 (Length: 346)
Name: NF4908_high_31
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 325
Target Start/End: Complemental strand, 43165738 - 43165430
Alignment:
| Q |
17 |
atctggatttccaccaaaacttgcatttacagtaataaaaaatcatgttatttattttatattgtctgatattttacatttttgtaatataattatgata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43165738 |
atctggatttccaccaaaacttgcatttacagtaataaaaaatcatgttatttattttatattgtctgatattttacatttttgtaatataattatgata |
43165639 |
T |
|
| Q |
117 |
taaatcactagctcatgacatggaaaatgaaaacagaataaatattacttgaatgtgaaacttgaaatcgacatacttgaattggagtgtactattctct |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43165638 |
taaatcactagctcatgacatggaaaatgaaagcagaataaatattacttgaatgtgaaacttgaaattgacatacttgaattggagtgtactattctct |
43165539 |
T |
|
| Q |
217 |
gaacgcacaaggagttgtattggaattgctcctgataactgatttccttcaaggtttcttccataaacaaatacaagattaccctttatacatgcttgca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43165538 |
gaacgcacaaggagttgtattggaattgctcctgataactgatttccttcaaggtttcttccataaacaaatacaagattacccttaatacatgcttgca |
43165439 |
T |
|
| Q |
317 |
taaaaatat |
325 |
Q |
| |
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||||||||| |
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| T |
43165438 |
taaaaatat |
43165430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 173 - 325
Target Start/End: Original strand, 43222167 - 43222320
Alignment:
| Q |
173 |
gaaacttgaaatcga-catacttgaattggagtgtactattctctgaacgcacaaggagttgtattggaattgctcctgataactgatttccttcaaggt |
271 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222167 |
gaaacttgaaatcgaacgcacttgaattggagtgtactattctctgaacgcacaaggagttgtattggaattgctcctgataactgatttccttcaaggt |
43222266 |
T |
|
| Q |
272 |
ttcttccataaacaaatacaagattaccctttatacatgcttgcataaaaatat |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43222267 |
ttcttccataaacaaatacaagattaccctttatacatgcttgcataaaaatat |
43222320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 43221989 - 43222153
Alignment:
| Q |
17 |
atctggatttccaccaaaacttgcatttacagtaataaaaaatcatgttatttattttatattgtctgatattttacatttttgtaatataattatgata |
116 |
Q |
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|||| |||||||||||||||||||||||||||||| ||| || | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43221989 |
atcttgatttccaccaaaacttgcatttacagtaacaaataaccgtgttatttatttgatattgtctgataccttacatttttgtaatataattatgata |
43222088 |
T |
|
| Q |
117 |
taaatcactagctcatgacatggaaaatgaaaacagaataaatattacttgaatgtgaaacttgaa |
182 |
Q |
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||||||||| ||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||| |
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| T |
43222089 |
taaatcacttgctcatgacatggcaaatgaaagcagaataaatattac-taaatgtgaaacttgaa |
43222153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 43174876 - 43174623
Alignment:
| Q |
20 |
tggatttccaccaaaacttgcatttacagtaataaaaaatcatgttatttattttatattgtctgatattttacatttttgtaatataattatgatataa |
119 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| | ||||||||||||||||| | |||||| || | || ||||||| ||||||| ||| | |||| |
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| T |
43174876 |
tggatttctaccaaaacttgcacatacagtaatacataatcatgttatttatttgacattgtcagacaccataaatttttgaaatataaatataagataa |
43174777 |
T |
|
| Q |
120 |
atcactagctcatgacatggaaaatgaaaacagaataaatattacttgaatgtgaaacttgaaatcg-acatacttgaattggagtgtactattctctga |
218 |
Q |
| |
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||||||| ||||| |||||||||||||| || | |||||| | || || ||||||||||| | ||||||||| ||| ||| ||||||| ||||| |
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| T |
43174776 |
atcactaactcatcacatggaaaatgaagtcata--aaatat---gtaaaagtaaaacttgaaatagaacatacttggattcgagcatactattttctga |
43174682 |
T |
|
| Q |
219 |
acgcacaaggagttgtattggaattgctcctgataactgatttccttcaaggtttcttc |
277 |
Q |
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||||||||||||||||| |||||||| ||||| || |||||||||||| | |||||||| |
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| T |
43174681 |
acgcacaaggagttgtactggaattgatcctgctagctgatttccttccaagtttcttc |
43174623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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