View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_4 (Length: 628)
Name: NF4908_high_4
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 84 - 558
Target Start/End: Original strand, 42965811 - 42966288
Alignment:
| Q |
84 |
cgtaacaaaactatattgttgagtttactgaatatgcaagcaaattatttttgttcgccatttaccaagggtgactttcctcaacaattattgtttttta |
183 |
Q |
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| T |
42965811 |
cgtaacaaagctatattgttgagtttactgaatatgcaagcaaattatttttgttcgccatttaccaagggtgactttcctcaacaattattgtttttta |
42965910 |
T |
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| Q |
184 |
ttttgcatcctctatctcgatgatatgttatgtt---ttgcgaagttgcaaaggtgcattttccaacattaaggtactctcatacttatttgaaagctat |
280 |
Q |
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| T |
42965911 |
ttctgcatcctctatctcgatgatatgttatgttgttttgcaaaggtgcaaaggtgcattttccaacattaaggtactctcatacttctttgaaagctat |
42966010 |
T |
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| Q |
281 |
gctcaaatttaagactaacacattaatcttaaaaaatctacaatctttgttggatcaatttctcattcgagactgtctacgatagctaattcacttggct |
380 |
Q |
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| T |
42966011 |
gctcaaatttaagactaacacattaaacttaaaaaatctacaatctttgttggatcaatttctcattcgagactgtctatgatagctaattcacttggct |
42966110 |
T |
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| Q |
381 |
tcaatactggattcctacctttcttatacacggggtacctatcttcaagggaaatccaaagtcgtttacttttagtcagtagtagacaaaatcaaggtga |
480 |
Q |
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| T |
42966111 |
tcaatactggattcctacctttcgtatacacggggtacctatcttcaagggaaatccaaagtcgtttacttttagtcagtagtagacaaaatcaaggtga |
42966210 |
T |
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| Q |
481 |
agcttgcttcatggaaggccttactgcttactttgtaggtagactgaaacttctcaaaagtgttatccaaagcatggt |
558 |
Q |
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| T |
42966211 |
agcttgcttcatggaaggcctcactacttactttgtaggtagactgaaacttctcaaaagtgttatgcaaagcatggt |
42966288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 555 - 620
Target Start/End: Original strand, 42966314 - 42966379
Alignment:
| Q |
555 |
tggtctataagcctcattaaggaacttgagaggtacatgaaaattttcttcttgttgttgatgatg |
620 |
Q |
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| T |
42966314 |
tggtcgataagcctcattaaggaacttgagaggtacatgaaaaatttcttgttgttgttgatgatg |
42966379 |
T |
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