View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4908_high_45 (Length: 283)
Name: NF4908_high_45
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_45 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 13 - 283
Target Start/End: Original strand, 17083352 - 17083624
Alignment:
| Q |
13 |
aatatacaataggtttgcagggtcattgaaatttgataaacaatatagcatccaattgttttgaccttaacttgaatgtaagacaaagatttatagtgct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17083352 |
aatatacaataggtttgcagggtcattgaaatttgataaacaatatagcatccaattgttttgaccttaacttgaatgtaagacaaagatttatagtgct |
17083451 |
T |
|
| Q |
113 |
tcctaaatgtttctttgctaggaatctaatatagatccaactgtggcagagtccaatttttaaacccagcaatttctgattctgagcatagataatgaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17083452 |
tcctaaatgtttctttgctaggaatctaatatagatccaactgtggcagagtccaatttttaaacccagcaatttctgattctgagcatagataatgaaa |
17083551 |
T |
|
| Q |
213 |
g--catcgattatagtccatgtaaggaacataaatatggttatttcgggtaacacaaactttggtggcaagaa |
283 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17083552 |
gcacatcgattatagtccatgtaaggaacataaatatagttatttcgggtaacacaaactttggtggcaagaa |
17083624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University