View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4908_high_58 (Length: 255)

Name: NF4908_high_58
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4908_high_58
NF4908_high_58
[»] chr8 (7 HSPs)
chr8 (1-236)||(17083710-17083945)
chr8 (19-130)||(22172041-22172154)
chr8 (4-133)||(6094663-6094794)
chr8 (4-133)||(21941205-21941336)
chr8 (4-133)||(15326738-15326869)
chr8 (4-133)||(15507107-15507238)
chr8 (4-91)||(28548587-28548674)
[»] scaffold0390 (2 HSPs)
scaffold0390 (4-133)||(6470-6601)
scaffold0390 (4-133)||(13486-13617)
[»] chr3 (19 HSPs)
chr3 (4-133)||(15341755-15341886)
chr3 (4-133)||(10572128-10572259)
chr3 (4-133)||(10578892-10579023)
chr3 (4-133)||(13249147-13249278)
chr3 (4-133)||(13517347-13517478)
chr3 (4-133)||(16482019-16482150)
chr3 (4-133)||(6110604-6110735)
chr3 (4-133)||(13211842-13211973)
chr3 (4-133)||(15357122-15357253)
chr3 (19-132)||(17136908-17137023)
chr3 (4-133)||(18520515-18520646)
chr3 (4-133)||(1647057-1647188)
chr3 (4-133)||(15600420-15600551)
chr3 (4-133)||(15606965-15607096)
chr3 (4-120)||(8491035-8491153)
chr3 (185-235)||(54385236-54385286)
chr3 (4-133)||(17780654-17780785)
chr3 (27-91)||(18523225-18523289)
chr3 (4-67)||(32056503-32056566)
[»] chr1 (7 HSPs)
chr1 (4-133)||(18532050-18532181)
chr1 (4-133)||(18252570-18252701)
chr1 (19-109)||(27310137-27310229)
chr1 (4-109)||(16358595-16358702)
chr1 (4-133)||(27130946-27131077)
chr1 (4-110)||(23507440-23507546)
chr1 (19-70)||(3855520-3855571)
[»] scaffold0234 (2 HSPs)
scaffold0234 (4-133)||(1857-1988)
scaffold0234 (4-133)||(10748-10879)
[»] scaffold0008 (1 HSPs)
scaffold0008 (4-133)||(229927-230058)
[»] chr7 (7 HSPs)
chr7 (4-133)||(15152983-15153114)
chr7 (4-133)||(29328324-29328455)
chr7 (4-133)||(11535598-11535729)
chr7 (4-133)||(11542516-11542647)
chr7 (4-133)||(12751366-12751497)
chr7 (4-133)||(18561538-18561669)
chr7 (4-129)||(12739076-12739201)
[»] chr6 (10 HSPs)
chr6 (4-133)||(11652263-11652394)
chr6 (4-133)||(17690976-17691107)
chr6 (4-133)||(27380788-27380919)
chr6 (4-133)||(27471171-27471302)
chr6 (4-133)||(29309430-29309561)
chr6 (4-133)||(29316389-29316520)
chr6 (4-133)||(17684005-17684136)
chr6 (4-133)||(27297169-27297300)
chr6 (4-133)||(16559008-16559139)
chr6 (19-74)||(25536788-25536843)
[»] chr4 (17 HSPs)
chr4 (4-133)||(8858707-8858838)
chr4 (4-133)||(18262752-18262883)
chr4 (4-133)||(55613223-55613354)
chr4 (4-131)||(18269613-18269742)
chr4 (4-135)||(26971003-26971136)
chr4 (4-114)||(5707860-5707972)
chr4 (4-114)||(5714488-5714600)
chr4 (19-133)||(19926296-19926412)
chr4 (4-129)||(869137-869264)
chr4 (4-133)||(10620869-10621000)
chr4 (4-133)||(10627948-10628079)
chr4 (4-133)||(26964180-26964311)
chr4 (4-133)||(28392670-28392801)
chr4 (19-133)||(8845758-8845874)
chr4 (4-133)||(4426151-4426282)
chr4 (6-71)||(10689821-10689886)
chr4 (6-71)||(10903461-10903526)
[»] chr2 (3 HSPs)
chr2 (4-133)||(21329784-21329915)
chr2 (4-91)||(18797046-18797133)
chr2 (19-133)||(22791394-22791510)
[»] scaffold0186 (1 HSPs)
scaffold0186 (4-133)||(25526-25657)
[»] chr5 (4 HSPs)
chr5 (4-133)||(19714034-19714165)
chr5 (4-133)||(24701758-24701889)
chr5 (4-133)||(24694994-24695125)
chr5 (4-133)||(19706755-19706886)
[»] scaffold0433 (1 HSPs)
scaffold0433 (19-133)||(7662-7778)
[»] scaffold0220 (1 HSPs)
scaffold0220 (4-115)||(18827-18940)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 17083710 - 17083945
Alignment:
Q  1 caaaaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaacaa 100  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  17083710 caaaaatgtctatgggttcaatattaaactagacagggatgacatggtgtatgccttgtgttcaatgtagacattaaagaaaaagggtaatcataaacaa 17083809  T
Q  101 tcattatcaaagaaatgttttgttagatcacataatannnnnnncacttaataatcattgtctataatattaaaggtatgtggcgtttaatttggaccca 200  Q
    |||||||||| |||||||||||||||||||||| |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17083810 tcattatcaaggaaatgttttgttagatcacatcatatttttttcacttaataatcattgtctataatattaaaggtatgtggcgtttaatttggaccca 17083909  T
Q  201 ctgaaaaattggtccaacttggacccattaacttaa 236  Q
     |||||||||||||||||||||||||||||||||||    
T  17083910 ttgaaaaattggtccaacttggacccattaacttaa 17083945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 22172041 - 22172154
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatcaaagaaat 116  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  |||||||||| |||||     
T  22172041 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgatcattatcacagaaag 22172140  T
Q  117 gttttgttagatca 130  Q
    ||||||| ||||||    
T  22172141 gttttgtcagatca 22172154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 6094663 - 6094794
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | |||| |||||| ||| |||  ||    
T  6094663 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaaaggtaattatacacatgat 6094762  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  6094763 cattatcacagaaaggtttcgtcagatcacat 6094794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 21941205 - 21941336
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  21941205 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 21941304  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| |  |||||||||    
T  21941305 cattatcacagaaaggtttcgacagatcacat 21941336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 15326738 - 15326869
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||||||||||||  || ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  |     
T  15326738 aaatgtctacgggcccaatattgaactagacaaggatggcacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgaa 15326837  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    ||||||||  ||||||||| || |||||||||    
T  15326838 cattatcacggaaatgtttcgtcagatcacat 15326869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 15507107 - 15507238
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||||||||||||  || ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  |     
T  15507107 aaatgtctacgggcccaatattgaactagacaaggatggcacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgaa 15507206  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    ||||||||  ||||||||| || |||||||||    
T  15507207 cattatcacggaaatgtttcgtcagatcacat 15507238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 28548587 - 28548674
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaat 91  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | |||||||||||    
T  28548587 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaat 28548674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 6601 - 6470
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    |||||||||||||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  6601 aaatgtctatgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 6502  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  6501 cattatcacagaaaggtttcgtcagatcacat 6470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0390; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 13617 - 13486
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||| |||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  13617 aaatgtctacgggcccaatattgaacaagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 13518  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  13517 cattatcacagaaaggtttcgtcagatcacat 13486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 15341886 - 15341755
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  ||||||||||||| ||| |||  ||    
T  15341886 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggaaaaagggtaattatacacatgat 15341787  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  15341786 cattatcacagaaaggtttcgtcagatcacat 15341755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 10572259 - 10572128
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  10572259 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 10572160  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  10572159 cattatcacagaaaggtttcgtcagatcacat 10572128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 10579023 - 10578892
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  10579023 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 10578924  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  10578923 cattatcacagaaaggtttcgtcagatcacat 10578892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 13249147 - 13249278
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  ||||||||||||| ||| |||  ||    
T  13249147 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggaaaaagggtaattatacacatgat 13249246  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| |||||  ||| || |||||||||    
T  13249247 cattatcacagaaagatttcgtcagatcacat 13249278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 13517347 - 13517478
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  13517347 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 13517446  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  13517447 cattatcacagaaaggtttcgtcagatcacat 13517478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 16482150 - 16482019
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  16482150 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 16482051  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  16482050 cattatcacagaaaggtttcgtcagatcacat 16482019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 6110604 - 6110735
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||||||    | ||||||||||| ||| |||  ||    
T  6110604 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgggggcaaaagggtaattatacacatgat 6110703  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  6110704 cattatcacagaaaggtttcgtcagatcacat 6110735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 13211842 - 13211973
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  13211842 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 13211941  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| |||||  ||| || |||||||||    
T  13211942 cattatcacagaaagatttcgtcagatcacat 13211973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 15357253 - 15357122
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  15357253 aaatgtctacgggcccaatattgaactagacaaggatgacacggtttatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 15357154  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| | ||| |||| || |||||||||    
T  15357153 cattatcacataaaggtttcgtcagatcacat 15357122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 17136908 - 17137023
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatcaaagaaat 116  Q
    ||||||| ||| |||||||||| ||| ||| ||||||||||||||||||||||||  |  ||||||||||||| ||| |||  |||||||||| |||||     
T  17136908 caatattgaacaagacaaggatgacacggtctatgccttgtgtttaatatagacaggagggaaaaagggtaattatacacatgatcattatcacagaaag 17137007  T
Q  117 gttttgttagatcaca 132  Q
    |||| || ||||||||    
T  17137008 gtttcgtcagatcaca 17137023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 18520515 - 18520646
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||| |||||||| ||| ||| ||||||||||||||||||||||||| |  | |||||| |||| ||| |||  ||    
T  18520515 aaatgtctacgggcccaatattgaactacacaaggatgacacggtctatgccttgtgtttaatatagacatgagggcaaaaggataattatacacatgat 18520614  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  18520615 cattatcacagaaaggtttcgtcagatcacat 18520646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 1647188 - 1647057
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  |||| || |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||| ||||| ||| |||  ||    
T  1647188 aaatgtctacgggcccaattttgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagagtaattatacacatgat 1647089  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  1647088 cattatcacagaaaggtttcgtcagatcacat 1647057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 15600551 - 15600420
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| |||||||| |||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  15600551 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttatgttcaatatagacatgagggcaaaagggtaattatacacatgat 15600452  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    || ||||| ||||| |||| || |||||||||    
T  15600451 cactatcacagaaaggtttcgtcagatcacat 15600420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 15607096 - 15606965
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| |||||||| |||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  15607096 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttatgttcaatatagacatgagggcaaaagggtaattatacacatgat 15606997  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    || ||||| ||||| |||| || |||||||||    
T  15606996 cactatcacagaaaggtttcgtcagatcacat 15606965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 8491035 - 8491153
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | |||||| |||| ||| |||  ||    
T  8491035 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaaggataattatacacatgat 8491134  T
Q  102 cattatcaaagaaatgttt 120  Q
    |||||||| ||||| ||||    
T  8491135 cattatcacagaaaggttt 8491153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 54385236 - 54385286
Alignment:
Q  185 gtttaatttggacccactgaaaaattggtccaacttggacccattaactta 235  Q
    |||||||||||||||| |||||||||| ||||||||||||| |||||||||    
T  54385236 gtttaatttggacccattgaaaaattgatccaacttggaccaattaactta 54385286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 17780785 - 17780654
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| |||  || ||||||||||||| ||||||||||| |  | ||||||||||| ||| | |  ||    
T  17780785 aaatgtctacgggcccaatattgaactagacaaggatgacacagtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacatatgat 17780686  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| | ||| |||| || |||||||||    
T  17780685 cattatcacataaaggtttcgtcagatcacat 17780654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 18523225 - 18523289
Alignment:
Q  27 aactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaat 91  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||||||| |  | |||||||||||    
T  18523225 aactagacaaggatgacacggtctatgccttgtgtttaatatagacatcagggcaaaagggtaat 18523289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 32056566 - 32056503
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaata 67  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||    
T  32056566 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaata 32056503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 18532181 - 18532050
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||| |  | ||||||||||| ||| |||  ||    
T  18532181 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgtttaatatagacatgagggcaaaagggtaattatacacatgat 18532082  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  18532081 cattatcacagaaaggtttcgtcagatcacat 18532050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 18252570 - 18252701
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  18252570 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 18252669  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  18252670 cattatcacagaaaggtttcgtcagatcacat 18252701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 27310229 - 27310137
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatca 109  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||||||||||    
T  27310229 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgatcattatca 27310137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 16358702 - 16358595
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||| || |  | ||||||||||| ||| |||  ||    
T  16358702 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagagatgagggcaaaagggtaattatacacatgat 16358603  T
Q  102 cattatca 109  Q
    ||||||||    
T  16358602 cattatca 16358595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 27131077 - 27130946
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| |||| |||||||| ||||||||||| |  | ||||||||||| ||| |||  |     
T  27131077 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgtcttgtgttcaatatagacatgagggcaaaagggtaattatacacatgaa 27130978  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    ||||||||  |||| ||||||| | |||||||    
T  27130977 cattatcacggaaaggttttgtcatatcacat 27130946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 23507440 - 23507546
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcata--aacaat 101  Q
    ||||||||| |||  |||||||||||||||| ||| | ||| |||  |||||||||||| ||||||||||  || ||||||||||||| |||  || |||    
T  23507440 aaatgtctaagggaccaatattaaactagaccagggtgacacggt--atgccttgtgttcaatatagacacgaaggaaaaagggtaattatacgaaaaat 23507537  T
Q  102 cattatcaa 110  Q
    |||||||||    
T  23507538 cattatcaa 23507546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 3855571 - 3855520
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatag 70  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||    
T  3855571 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatatag 3855520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 1988 - 1857
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  1988 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 1889  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  1888 cattatcacagaaaggtttcgtcagatcacat 1857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 10879 - 10748
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  10879 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 10780  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  10779 cattatcacagaaaggtttcgtcagatcacat 10748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 230058 - 229927
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||||||| |||| |||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  230058 aaatgtctacgggcccaatattgaactagacaaggatgacatggtttatgtcttgtgttcaatatagacataagggcaaaagggtaattatacacatgat 229959  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| | |||||||| || |||||||||    
T  229958 cattatcacataaatgtttcgtcagatcacat 229927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 15152983 - 15153114
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  15152983 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 15153082  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  15153083 cattatcacagaaaggtttcgtcagatcacat 15153114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 29328324 - 29328455
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  29328324 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 29328423  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  29328424 cattatcacagaaaggtttcgtcagatcacat 29328455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 11535729 - 11535598
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| |||||||||| || ||||||||||| |  | ||||||||||| ||| |||  ||    
T  11535729 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtattcaatatagacatgagggcaaaagggtaattatacacatgat 11535630  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  11535629 cattatcacagaaaggtttcgtcagatcacat 11535598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 11542647 - 11542516
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||| ||||||||| ||| ||| ||||||||||||| ||||||||||| |  | |||||| |||| ||| |||  ||    
T  11542647 aaatgtctacgggcccaatattgaacttgacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaaggataattatacacatgat 11542548  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  11542547 cattatcacagaaaggtttcgtcagatcacat 11542516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 12751366 - 12751497
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | |||||| |||| ||| |||  ||    
T  12751366 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaaggataattatacacatgat 12751465  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
     ||||||| ||||| |||| || |||||||||    
T  12751466 tattatcatagaaaggtttcgtcagatcacat 12751497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 18561538 - 18561669
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| | |  |     
T  18561538 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacataagggcaaaagggtaattatacatatgaa 18561637  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  18561638 cattatcacagaaaagtttcgtcagatcacat 18561669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 12739076 - 12739201
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||||   |  ||||||||||||| ||| |||  ||    
T  12739076 aaatgtctacgggaccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagac--gagggaaaaagggtaattatacacatgat 12739173  T
Q  102 cattatcaaagaaatgttttgttagatc 129  Q
    |||||||| ||||| |||| || |||||    
T  12739174 cattatcacagaaaggtttcgtcagatc 12739201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 11652263 - 11652394
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaac--aat 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| | || ||||||||||| ||| ||  |||    
T  11652263 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagagcaaaagggtaattatacacataat 11652362  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||| | ||||| |||| || |||||||||    
T  11652363 cattattacagaaaggtttcgtcagatcacat 11652394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 17691107 - 17690976
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  17691107 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 17691008  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  17691007 cattatcacagaaaggtttcgtcagatcacat 17690976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 27380919 - 27380788
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  27380919 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 27380820  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  27380819 cattatcacagaaaggtttcgtcagatcacat 27380788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 27471302 - 27471171
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  27471302 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 27471203  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  27471202 cattatcacagaaaggtttcgtcagatcacat 27471171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 29309430 - 29309561
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  29309430 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 29309529  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  29309530 cattatcacagaaaggtttcgtcagatcacat 29309561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 29316389 - 29316520
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  29316389 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 29316488  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  29316489 cattatcacagaaaggtttcgtcagatcacat 29316520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 17684136 - 17684005
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcat--aaacaat 101  Q
    |||||||||||||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||  |||  |     
T  17684136 aaatgtctatgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacataagggcaaaagggtaattatacaaatgaa 17684037  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  17684036 cattatcacagaaaagtttcgtcagatcacat 17684005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 27297169 - 27297300
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| |||  || ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  27297169 aaatgtctacgggcccaatattgaactagacaaggatgacacagtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 27297268  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  27297269 cattatcacagaaaggtttcgtcagatcacat 27297300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 16559139 - 16559008
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||| |||||||| |||  || ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  16559139 aaatgtctacgggcccaatattgaactaaacaaggatgacacagtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 16559040  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| |||||  ||| || |||||||||    
T  16559039 cattatcacagaaagatttcgtcagatcacat 16559008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 25536843 - 25536788
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacat 74  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||||||    
T  25536843 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacat 25536788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 8858707 - 8858838
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  8858707 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 8858806  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  8858807 cattatcacagaaaggtttcgtcagatcacat 8858838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 18262752 - 18262883
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  18262752 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 18262851  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  18262852 cattatcacagaaaggtttcgtcagatcacat 18262883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 55613223 - 55613354
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  55613223 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 55613322  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  55613323 cattatcacagaaaggtttcgtcagatcacat 55613354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 18269613 - 18269742
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  18269613 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 18269712  T
Q  102 cattatcaaagaaatgttttgttagatcac 131  Q
    |||||||| ||||| |||| || |||||||    
T  18269713 cattatcacagaaaggtttcgtcagatcac 18269742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 26971003 - 26971136
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| |||  || ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  26971003 aaatgtctacgggcccaatattgaactagacaaggatgacacagtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 26971102  T
Q  102 cattatcaaagaaatgttttgttagatcacataa 135  Q
    |||||||| ||||| |||| || |||||||||||    
T  26971103 cattatcacagaaaggtttcgtcagatcacataa 26971136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 5707860 - 5707972
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  5707860 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 5707959  T
Q  102 cattatcaaagaa 114  Q
    |||||||||||||    
T  5707960 cattatcaaagaa 5707972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 5714488 - 5714600
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  5714488 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 5714587  T
Q  102 cattatcaaagaa 114  Q
    |||||||||||||    
T  5714588 cattatcaaagaa 5714600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 19926412 - 19926296
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatcaaagaaat 116  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  |||||||||| |||||     
T  19926412 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgatcattatcacagaaag 19926313  T
Q  117 gttttgttagatcacat 133  Q
    |||| || |||||||||    
T  19926312 gtttcgtcagatcacat 19926296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 869137 - 869264
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||| ||||| ||| |||  ||    
T  869137 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagagtaattatacacatgat 869236  T
Q  102 cattatcaaagaaatgttttgttagatc 129  Q
    |||||||| ||||| |||| ||||||||    
T  869237 cattatcacagaaaggtttcgttagatc 869264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 10621000 - 10620869
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| |||||||| |||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  10621000 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttatgttcaatatagacatgagggcaaaagggtaattatacacatgat 10620901  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  10620900 cattatcacagaaaggtttcgtcagatcacat 10620869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 10628079 - 10627948
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| |||||||| |||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  10628079 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttatgttcaatatagacatgagggcaaaagggtaattatacacatgat 10627980  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  10627979 cattatcacagaaaggtttcgtcagatcacat 10627948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 26964180 - 26964311
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| |||  || ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  26964180 aaatgtctacgggcccaatattgaactagacaaggatgacacagtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 26964279  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  26964280 cattatcacagaaaggtttcgtcagatcacat 26964311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 28392801 - 28392670
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  28392801 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 28392702  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| ||||  | |||||||||    
T  28392701 cattatcacagaaaggtttcatcagatcacat 28392670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 8845758 - 8845874
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatcaaagaaat 116  Q
    ||||||| |||||||||||||| |||  || ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  |||||||||| |||||     
T  8845758 caatattgaactagacaaggatgacacagtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatatacatgatcattatcacagaaag 8845857  T
Q  117 gttttgttagatcacat 133  Q
    |||| || |||||||||    
T  8845858 gtttcgtcagatcacat 8845874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 4426282 - 4426151
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    |||||||||||||  ||||||| |||||||||||||| |||   | ||||||||||||| | ||||||||| |  ||||||||||||| ||| |||  ||    
T  4426282 aaatgtctatgggcccaatattgaactagacaaggatgacacaatatatgccttgtgttcagtatagacatgagggaaaaagggtaattatacacatgat 4426183  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
     ||||||| ||||| |||| || |||||||||    
T  4426182 tattatcacagaaaggtttcgtcagatcacat 4426151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 10689821 - 10689886
Alignment:
Q  6 atgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatataga 71  Q
    ||||||||| |  ||||||| |||||||||||||| ||| ||| ||||| ||||||| ||||||||    
T  10689821 atgtctatgagcccaatattgaactagacaaggatgacacggtctatgcattgtgttcaatataga 10689886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 10903461 - 10903526
Alignment:
Q  6 atgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatataga 71  Q
    ||||||||| |  ||||||| |||||||||||||| ||| ||| ||||| ||||||| ||||||||    
T  10903461 atgtctatgagcccaatattgaactagacaaggatgacacggtctatgcattgtgttcaatataga 10903526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 21329915 - 21329784
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  21329915 aaatgtctacgggcccaatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 21329816  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  21329815 cattatcacagaaaggtttcgtcagatcacat 21329784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 18797046 - 18797133
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaat 91  Q
    ||||||||| |||  ||||||| |||||||||||||| ||||||| |||||||||| || ||||||||||| |  |||||||||||||    
T  18797046 aaatgtctacgggcccaatattgaactagacaaggatgacatggtttatgccttgtattcaatatagacatgagggaaaaagggtaat 18797133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 22791510 - 22791394
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatcaaagaaat 116  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||||||||||  ||||     
T  22791510 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgatcattatcactgaaag 22791411  T
Q  117 gttttgttagatcacat 133  Q
    |||| || |||||||||    
T  22791410 gtttcgtcagatcacat 22791394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 25657 - 25526
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcat--aaacaat 101  Q
    ||||||||| |||  ||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||| |  | ||||||||||| ||  | | |||    
T  25657 aaatgtctacgggcccaatattgaactagacaaggatgacatggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacatataat 25558  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| | ||| |||| || |||||||||    
T  25557 cattatcacataaaggtttcgtcagatcacat 25526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 19714165 - 19714034
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||| |||||||| ||| ||| ||||||||||||||||||||||||| |  | ||||||||||| ||| |||  ||    
T  19714165 aaatgtctacgggcccaatattgaactatacaaggatgacacggtctatgccttgtgtttaatatagacatgagggcaaaagggtaattatacacatgat 19714066  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| | ||| |||| || |||||||||    
T  19714065 cattatcacataaaggtttcgtcagatcacat 19714034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 24701889 - 24701758
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||||||||||||  || ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  24701889 aaatgtctacgggcccaatattgaactagacaaggatggcacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 24701790  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  24701789 cattatcacagaaaggtttcgtcagatcacat 24701758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 24695125 - 24694994
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||||||||||||||   | ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  24695125 aaatgtctacgggcccaatattgaactagacaaggatggaacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 24695026  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| |||| || |||||||||    
T  24695025 cattatcacagaaaggtttcgtcagatcacat 24694994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 19706886 - 19706755
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| |||||||||||||  ||| ||| |||| |||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  19706886 aaatgtctacgggcccaatattgaactagacaaggacgacacggtctatggcttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 19706787  T
Q  102 cattatcaaagaaatgttttgttagatcacat 133  Q
    |||||||| ||||| ||||  | |||||||||    
T  19706786 cattatcacagaaaggtttcatcagatcacat 19706755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 7662 - 7778
Alignment:
Q  19 caatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--atcattatcaaagaaat 116  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||| ||||||| ||| |  | ||||||||||| ||| |||  |||||||||| |||||     
T  7662 caatattgaactagacaaggatgacacggtctatgccttgtgttcaatataggcatgagggcaaaagggtaattatacacatgatcattatcacagaaag 7761  T
Q  117 gttttgttagatcacat 133  Q
    |||| || |||||||||    
T  7762 gtttcgtcagatcacat 7778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 18827 - 18940
Alignment:
Q  4 aaatgtctatgggttcaatattaaactagacaaggatcacatggtgtatgccttgtgtttaatatagacattaaagaaaaagggtaatcataaaca--at 101  Q
    ||||||||| |||  ||||||| ||| |||||||||| ||| ||| ||||||||||||| ||||||||||| |  | ||||||||||| ||| |||  ||    
T  18827 aaatgtctacgggcccaatattgaacgagacaaggatgacacggtctatgccttgtgttcaatatagacatgagggcaaaagggtaattatacacatgat 18926  T
Q  102 cattatcaaagaaa 115  Q
    |||||||| |||||    
T  18927 cattatcacagaaa 18940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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