View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4908_high_6 (Length: 525)
Name: NF4908_high_6
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 64 - 386
Target Start/End: Complemental strand, 28725703 - 28725385
Alignment:
| Q |
64 |
tttcaacaaaaagtaaataatgaatcaaaactatagatttatttatactcataacaaggatgtttgaaacgattgatcaagttcatccataagtgacaag |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28725703 |
tttcaacaaaaagtaaataatgaatcaaaactatagatttatttatactcataacaaggatgtttgaaacgattgatcaagttcatccttaagtgacaag |
28725604 |
T |
|
| Q |
164 |
aaactaaacaaatatagagacaatgcttacatttaagttcctccatattagaataacctcaaatactaatcgattattctaaatctaaaagaagcaagca |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28725603 |
aaactaaacaaatatagagacaatgcttacatttaagttcctccatattagaataacctcaaatactaatcgattattctaaatctaaaagaagcaagca |
28725504 |
T |
|
| Q |
264 |
attaattctacaaagtaagccatatatcttcaccagaaaataagattacttgttgaacaaacatcgtctccattcaatgatgttgtagatagttaatgag |
363 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28725503 |
attaattctacaaagtaagcc----atcttcaccagaaaataagattacttgttgaacaaacatcgtctccattcaatgatgttgtagatagttaatgag |
28725408 |
T |
|
| Q |
364 |
ttgaagataattgacccacctga |
386 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28725407 |
ttgaagataattgacccacctga |
28725385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 129 - 386
Target Start/End: Complemental strand, 28728122 - 28727873
Alignment:
| Q |
129 |
gaaacgattgatcaagttcatccataagtgacaagaaactaaacaaatatagagacaatgcttacatttaagttcctccatattagaataacctcaaata |
228 |
Q |
| |
|
||||||||||||||||||| | |||||| |||||||| |||||||||| ||| || || ||||| ||||||| |||| | | || ||| || || |
|
|
| T |
28728122 |
gaaacgattgatcaagttcgttcataagctacaagaaaataaacaaatagagaaac--tgtttacaattaagtttatccacaccaaaaacaccctaagta |
28728025 |
T |
|
| Q |
229 |
ctaatcgattattctaaatctaaaagaagcaagcaattaattctacaaagtaagccatatatcttcaccagaaaataagatt-acttgttgaacaaacat |
327 |
Q |
| |
|
|||||| || ||||| || ||||||||||||| ||||||||||| |||||||||| ||||||| ||| |||||||||| | ||||| ||||| ||| |
|
|
| T |
28728024 |
ctaatcaat-attcttaaaataaaagaagcaagtaattaattctataaagtaagcc----atcttcaacagtaaataagattaaattgttaaacaatcat |
28727930 |
T |
|
| Q |
328 |
cgtctccattcaatgatgttgtagatagttaatgagttgaagataattgacccacctga |
386 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
28727929 |
cgtctccattcaaagatgttggagatagtt--tgagttgaagatgattgactcacctga |
28727873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 460 - 518
Target Start/End: Complemental strand, 28725292 - 28725234
Alignment:
| Q |
460 |
tacaaagatctttgtacaaagacttacatttgttttttgattaatccttgttcttctca |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28725292 |
tacaaagatctttgtacaaagacttacatttgttttttgattaatccttgttcttctca |
28725234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 249 - 386
Target Start/End: Complemental strand, 28734221 - 28734087
Alignment:
| Q |
249 |
taaaagaagcaagcaattaattctacaaa--gtaagccatatatcttcaccagaaaataagattac-ttgttgaacaaacatcgtctccattcaatgatg |
345 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||||||| ||||| ||| ||||||||||| ||||| ||||| ||||||||||||||||| ||| |
|
|
| T |
28734221 |
taaaagaagcaagtaattaattctataaaaagtaagccat----cttcaacagtaaataagattaaattgttaaacaatcatcgtctccattcaataatg |
28734126 |
T |
|
| Q |
346 |
ttgtagatagttaatgagttgaagataattgacccacctga |
386 |
Q |
| |
|
||||||||||| |||| ||||||| |||||| ||||||| |
|
|
| T |
28734125 |
ctgtagatagtt--tgagctgaagatgattgactcacctga |
28734087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 28725768 - 28725729
Alignment:
| Q |
18 |
cattaaagatattaaccattagttttcagcactaacaaat |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28725768 |
cattaaagatattaaccattagttttcagcactaacaaat |
28725729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University