View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_61 (Length: 254)
Name: NF4908_high_61
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_61 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 21372015 - 21372118
Alignment:
| Q |
14 |
aatgttgctaaagacaagttcacaaaggttagtttgtgtcattggaaccacaacacaattaatcaattgagttcaattctttcaagctcaaagtatatta |
113 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372015 |
aatgttgctaaagacaagttcacaaaggttagtttgtatcattggaaccacagcacaattaatcaattgagttcaattctttcaagctcaaagtatatta |
21372114 |
T |
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| Q |
114 |
aaaa |
117 |
Q |
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|||| |
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| T |
21372115 |
aaaa |
21372118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 21385542 - 21385439
Alignment:
| Q |
14 |
aatgttgctaaagacaagttcacaaaggttagtttgtgtcattggaaccacaacacaattaatcaattgagttcaattctttcaagctcaaagtatatta |
113 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385542 |
aatgttgctaaagacaagttcacaaaggttagtttgtatcattggaaccacagcacaattaatcaattgagttcaattctttcaagctcaaagtatatta |
21385443 |
T |
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| Q |
114 |
aaaa |
117 |
Q |
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|||| |
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| T |
21385442 |
aaaa |
21385439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 21372157 - 21372247
Alignment:
| Q |
155 |
tggtatgctataacaaattacaggacatggatttttgcattgctttatggttactctatgggagttgaattaaccactgacaatgtcattg |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372157 |
tggtatgctataacaaattacaggacatggatttttgcattgctttatggttactctatgggagttgaattaaccactgacaatgtcattg |
21372247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 21385400 - 21385310
Alignment:
| Q |
155 |
tggtatgctataacaaattacaggacatggatttttgcattgctttatggttactctatgggagttgaattaaccactgacaatgtcattg |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385400 |
tggtatgctataacaaattacaggacatggatttttgcattgctttatggttactctatgggagttgaattaaccactgacaatgtcattg |
21385310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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