View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4908_high_62 (Length: 252)
Name: NF4908_high_62
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_62 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 47128396 - 47128157
Alignment:
| Q |
13 |
atactccctctggacttaaatatacgtaaaaaagtttatatgtacttgtctgaatttcgaccaagcacatctacattttctgcttatattttagttcaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47128396 |
atactccctctggacttaaatatacgtaaaaaagtttatatgtacttgtccgaatttcgaccaagtacatctacattttctgcttatattttagttcaga |
47128297 |
T |
|
| Q |
113 |
gtttacaattttaattaaaaaacttatccttgttatnnnnnnntaatatgtttcaatgtttcttgtacatataggaatttcctcctgccagcaagctgga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47128296 |
gtttacaattttaattaaaaaacttatccttgttataaaaaaataatatgtttcaatgtttcttgtacatgtaggaatttcctcctgccagcaagctgga |
47128197 |
T |
|
| Q |
213 |
cccaagtgtttatggagaccaaaacagttacatccaagca |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47128196 |
cccaagtgtttatggagaccaaaacagttccatccaagca |
47128157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University