View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_64 (Length: 250)
Name: NF4908_high_64
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_64 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4065002 - 4064764
Alignment:
| Q |
1 |
catacacagaagttttactcgtacccgtggcaactcctgatttcagtatgcctaacatggtcattacaattacttgcatagtttttgtattgtattttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4065002 |
catacacagaagttttactcgtacccgtggcaactcctgatttcagtatgcctaacatggtcattacaattacttgcatagtttttgtattgtattttgt |
4064903 |
T |
|
| Q |
101 |
attcttgctaaaggtacttcaaggacgggttggagatgaggaaatacttttgaaaaacaaaggtaactcttgactcttgttagtcccaatatcttggggt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4064902 |
attcttgataaaggtacttcaaggacgggttggagatgaggaaatacttttgaaaaacaaaggtaactcttgactcttgttagtcccaatatcttggggt |
4064803 |
T |
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| Q |
201 |
acaagtaattatattgtgtataccaataagcgaccctat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
4064802 |
acaagtaattatattgtgtataccaataagcgaccctat |
4064764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 4058656 - 4058477
Alignment:
| Q |
1 |
catacacagaagttttactcgtacccgtggcaactcctgatttcagtatgcctaacatggtcattacaattacttgcatagtttttgtattgtattttgt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||||||||||||||| |||||| ||| ||||| ||||||||||||| |||||||| ||||||||||| |
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| T |
4058656 |
catacacagaagttttgctcgtacccctaacaactcctgatttcagcatgccttacaacgtcatcacaattacttgcacagtttttgcattgtattttgg |
4058557 |
T |
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| Q |
101 |
attcttgctaaaggtacttcaaggacgggttggagatgaggaaatacttttgaaaaacaaaggtaactcttgactcttgt |
180 |
Q |
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|| ||||||||| ||||| | | |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4058556 |
atccttgctaaatgtactccgaagacgagttggagaggaggaaagacttttgaaaaacaaaggtaactcttgactcttgt |
4058477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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