View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4908_high_66 (Length: 249)

Name: NF4908_high_66
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4908_high_66
NF4908_high_66
[»] chr6 (1 HSPs)
chr6 (1-238)||(31100363-31100600)
[»] chr5 (3 HSPs)
chr5 (1-238)||(7819114-7819351)
chr5 (171-238)||(19358094-19358161)
chr5 (126-156)||(31468844-31468874)
[»] chr2 (1 HSPs)
chr2 (1-238)||(31997745-31997982)
[»] chr1 (2 HSPs)
chr1 (136-229)||(7445859-7445952)
chr1 (65-193)||(35601242-35601370)
[»] chr3 (5 HSPs)
chr3 (126-164)||(15462629-15462667)
chr3 (89-169)||(11752083-11752163)
chr3 (126-159)||(21789261-21789294)
chr3 (126-159)||(39464268-39464301)
chr3 (114-198)||(36834135-36834219)
[»] chr7 (1 HSPs)
chr7 (71-138)||(22902022-22902089)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31100600 - 31100363
Alignment:
Q  1 tttggtgtgctacacagattctccgctctccataagactcatcacaggtcatgttccaagttaccatgtttatgcggttttaatccatgatattaaagat 100  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31100600 tttggtgtgctattcagattctctgctctccataagactcatcattggtcatgttccaagttaccatgtttatgcggttttaatccatgatataaaagat 31100501  T
Q  101 ctcttgtctgcaagaaacttcaacattcatcattgtctccgtgaaggaaatcaatgcgccgacttcatgacgaagcttggggccaactccaatgaagatc 200  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  31100500 ctcttgtcctcaagaaacttcaacattcatcattgcctccgtgaaggaaatcaatgcgccgacttcatggcgaagcatggggccaactccaatgaagatc 31100401  T
Q  201 tatctgttcatgctacacctccgatcgacttactccct 238  Q
    | ||| |||||||||| ||||||| |||||||||||||    
T  31100400 tttctattcatgctactcctccgaccgacttactccct 31100363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 7819114 - 7819351
Alignment:
Q  1 tttggtgtgctacacagattctccgctctccataagactcatcacaggtcatgttccaagttaccatgtttatgcggttttaatccatgatattaaagat 100  Q
    ||||||||||||  ||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7819114 tttggtgtgctattcagattctctgctctccataacactcatcactggtcatgttccaagttaccatgtttatgcggttttaatccatgatataaaagat 7819213  T
Q  101 ctcttgtctgcaagaaacttcaacattcatcattgtctccgtgaaggaaatcaatgcgccgacttcatgacgaagcttggggccaactccaatgaagatc 200  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7819214 ctcttgtcctcaagaaacttcaacattcatcattgcctccgtgaaggaaatcaatgcgccgacttcatggcgaagcttggggccaactccaatgaagatc 7819313  T
Q  201 tatctgttcatgctacacctccgatcgacttactccct 238  Q
    | ||  |||||||||| ||||||| |||| ||||||||    
T  7819314 tttccattcatgctactcctccgaccgacctactccct 7819351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 19358161 - 19358094
Alignment:
Q  171 cgaagcttggggccaactccaatgaagatctatctgttcatgctacacctccgatcgacttactccct 238  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||  |||||| |||| | ||||||    
T  19358161 cgaagcttggggccaacttcaatgaagatctttctattcatgctactgctccgaccgacctcctccct 19358094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Original strand, 31468844 - 31468874
Alignment:
Q  126 ttcatcattgtctccgtgaaggaaatcaatg 156  Q
    |||||||||||||||||||||||||||||||    
T  31468844 ttcatcattgtctccgtgaaggaaatcaatg 31468874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 31997745 - 31997982
Alignment:
Q  1 tttggtgtgctacacagattctccgctctccataagactcatcacaggtcatgttccaagttaccatgtttatgcggttttaatccatgatattaaagat 100  Q
    ||||||||||||  ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  31997745 tttggtgtgctattcagattctctgctctccataagactcctcactggtcatgttccaagttaccatgtttatgcggtgttaatccatgatataaaagat 31997844  T
Q  101 ctcttgtctgcaagaaacttcaacattcatcattgtctccgtgaaggaaatcaatgcgccgacttcatgacgaagcttggggccaactccaatgaagatc 200  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||    
T  31997845 ctcttgtcctcaagaaacttcaacattcatcattgcctccgtgaaggaaatcaatgcgccgacttcatggcgaagcctagggccaactccaatgaagatc 31997944  T
Q  201 tatctgttcatgctacacctccgatcgacttactccct 238  Q
    | ||| |||||||||| ||||||| |||| | ||||||    
T  31997945 tttctattcatgctactcctccgaccgacctcctccct 31997982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 7445952 - 7445859
Alignment:
Q  136 tctccgtgaaggaaatcaatgcgccgacttcatgacgaagcttggggccaactccaatgaagatctatctgttcatgctacacctccgatcgac 229  Q
    |||||||||||||||||| |||||||| |||||| |||||||||||||||||  |||||||||||| ||| |||||||||| ||||||| ||||    
T  7445952 tctccgtgaaggaaatcagtgcgccgatttcatggcgaagcttggggccaacaacaatgaagatctttcttttcatgctactcctccgagcgac 7445859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 65 - 193
Target Start/End: Original strand, 35601242 - 35601370
Alignment:
Q  65 catgtttatgcggttttaatccatgatattaaagatctcttgtctgcaagaaacttcaacattcatcattgtctccgtgaaggaaatcaatgcgccgact 164  Q
    ||||| ||||| |||||||| || || || ||||| ||||||||  |||||| ||||| |||||||||||||||||||||||||||||||||  | ||||    
T  35601242 catgtatatgcagttttaatacaagacataaaagacctcttgtcctcaagaagcttcaccattcatcattgtctccgtgaaggaaatcaatgtactgact 35601341  T
Q  165 tcatgacgaagcttggggccaactccaat 193  Q
     |||| | ||| |||||||||||||||||    
T  35601342 acatggcaaagattggggccaactccaat 35601370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 15462667 - 15462629
Alignment:
Q  126 ttcatcattgtctccgtgaaggaaatcaatgcgccgact 164  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  15462667 ttcatcattgtctccgtgaaggaaatcaatgcgcggact 15462629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 11752083 - 11752163
Alignment:
Q  89 gatattaaagatctcttgtctgcaagaaacttcaacattcatcattgtctccgtgaaggaaatcaatgcgccgacttcatg 169  Q
    ||||||||||||||||||||  ||||||| |||   |||||||||||||   | |||||||||||||| || |||||||||    
T  11752083 gatattaaagatctcttgtccacaagaaatttctcgattcatcattgtccgagagaaggaaatcaatgtgctgacttcatg 11752163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 21789261 - 21789294
Alignment:
Q  126 ttcatcattgtctccgtgaaggaaatcaatgcgc 159  Q
    ||||||||||||||||||||||||| ||||||||    
T  21789261 ttcatcattgtctccgtgaaggaaaccaatgcgc 21789294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 39464268 - 39464301
Alignment:
Q  126 ttcatcattgtctccgtgaaggaaatcaatgcgc 159  Q
    ||||||||||||||||||||||||| ||||||||    
T  39464268 ttcatcattgtctccgtgaaggaaaccaatgcgc 39464301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 36834219 - 36834135
Alignment:
Q  114 gaaacttcaacattcatcattgtctccgtgaaggaaatcaatgcgccgacttcatgacgaagcttggggccaactccaatgaaga 198  Q
    ||||||||  |||||||||||| ||| | ||||| |||||||| || |||||| || | |||||||| |||| ||| ||||||||    
T  36834219 gaaacttctccattcatcattgcctcggagaagggaatcaatgtgcagacttcttggctaagcttggagccacctcgaatgaaga 36834135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 22902089 - 22902022
Alignment:
Q  71 tatgcggttttaatccatgatattaaagatctcttgtctgcaagaaacttcaacattcatcattgtct 138  Q
    ||||| |||||||| || ||||| ||||||||||||||| |||| || |||| | |||||||||||||    
T  22902089 tatgctgttttaattcaagatatcaaagatctcttgtcttcaaggaatttcaccgttcatcattgtct 22902022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University