View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4908_high_7 (Length: 503)
Name: NF4908_high_7
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 6 - 488
Target Start/End: Complemental strand, 40280500 - 40280012
Alignment:
| Q |
6 |
atggacatcatcatcaccccctaggcctccaccatttgaatacacgccattaacaccccccacacgccctattgatcctcaaacattcttctattccgaa |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40280500 |
atggacaccatcatcaccccctaggcctccaccatttgaatacacgccattaacaccctccacacgccctattgatcctcaaacattcttctattccgaa |
40280401 |
T |
|
| Q |
106 |
ctcatcacttctcttcctcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcatcaagaacaaga-- |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40280400 |
ctcatcacttctcttcctcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcatcaagaacaagaac |
40280301 |
T |
|
| Q |
204 |
----tctttctcctcctaccaataaggtgctgggacgacgtcaacgtattctaccaaagcaccaacctgtgaaaaagggccgactacctaagagcatgac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| | |
|
|
| T |
40280300 |
aagatctttctcctcctaccaataaggtgctgggacgacgtcaacgtattctaccaaagcaccaacctgtgaaaaagagacgactaactaagagcatggc |
40280201 |
T |
|
| Q |
300 |
agttccaccgccattcccatgggccacttctaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactcaagactatctctggaact |
399 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40280200 |
agttccaccaccattcccatgggccacttcgaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactcaatactatctctggaact |
40280101 |
T |
|
| Q |
400 |
cttgaatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcatagaggaaag |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40280100 |
cttgaatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcatagaggaaag |
40280012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 14 - 488
Target Start/End: Original strand, 40457858 - 40458338
Alignment:
| Q |
14 |
catcatcaccccctaggcctccaccatttgaatacacgccattaacaccccccacacgccctattgatcctcaaacattcttctattccgaactcatcac |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40457858 |
catcatcaccccctagacctccaccatttgaatacacgccattaacaccctccacacgccctattgatcctcaaacattcttctattccgaactcatcac |
40457957 |
T |
|
| Q |
114 |
ttctcttcctcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcatcaag------aacaagatctt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40457958 |
ttctcttcctcgtcctcctaattttgactctaaccctaataatcttgccctaattcccaaattaccattccactatcatcaagaacaagaacaagatctt |
40458057 |
T |
|
| Q |
208 |
tctcctcctaccaataaggtgctgggacgacgtcaacgtattctaccaaagcaccaacctgtgaaaaagggccgactacctaagagcatgacagttccac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| ||||||||| |
|
|
| T |
40458058 |
tctcctcctaccaataaggtgctgggacgacgtcaacgtattctaccaaagcaccaacctgtgaaaaagagacgactaactaagagcatggcagttccac |
40458157 |
T |
|
| Q |
308 |
cgccattcccatgggccacttctaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactcaagactatctctggaactcttgaatg |
407 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40458158 |
caccattcccatgggccacttcgaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactcaatactatctctggaactcttgaatg |
40458257 |
T |
|
| Q |
408 |
caaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcatagaggaaag |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40458258 |
caaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcatagaggaaag |
40458338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 296 - 488
Target Start/End: Complemental strand, 40285165 - 40284973
Alignment:
| Q |
296 |
tgacagttccaccgccattcccatgggccacttctaaacgtgccatcttgcacacacttgaccacatgttatccgtagtgaaactcaagactatctctgg |
395 |
Q |
| |
|
||||||| ||||| || |||| |||||| ||||| ||||| || | |||| ||||||| |||||| ||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
40285165 |
tgacagtaccaccaccgttcctatgggcaacttcaaaacgcgctaccttgtacacactggaccacttgttatctgtattgaaactccagactatctctgg |
40285066 |
T |
|
| Q |
396 |
aactcttgaatgcaaagtctgtaagtttcaacaagacattcagtttgatttggttgagaattttgagaaagtgacaaggttcatagaggaaag |
488 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40285065 |
aactcttgaatgcaaattctgtaagtttcaacaagacattcagtttgatttggttgagaatttcaggaaagtgacaaggttcatagaggaaag |
40284973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 175
Target Start/End: Complemental strand, 40285452 - 40285310
Alignment:
| Q |
36 |
accatttgaatacacgccattaacaccccccacacg---ccctattgatcctcaaacattcttctattccgaactcatcacttctcttcctcgtcctcct |
132 |
Q |
| |
|
||||| ||||||||| |||| |||||||| ||| || |||||||||||| || ||||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
40285452 |
accatctgaatacacaccatcaacaccccgcacgcgtctccctattgatccacagacattcttctattccgaactcataaccaatcttcctcatcctcct |
40285353 |
T |
|
| Q |
133 |
aattttgactctaaccctaataatcttgccctaattcccaaat |
175 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||||| ||||||| |
|
|
| T |
40285352 |
aattttgactctgaccttgataatcttgccctaatccccaaat |
40285310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 40280856 - 40280807
Alignment:
| Q |
11 |
catcatcatcaccccctaggcctccaccatttgaatacacgccattaaca |
60 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
40280856 |
catcatcatcgccacctaggcctccaccatctgaatacacaccattaaca |
40280807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University