View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_73 (Length: 237)
Name: NF4908_high_73
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_73 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 20387179 - 20386965
Alignment:
| Q |
7 |
agcagcacagattagaacataaaattaggaacatcaagacacgagatagcaaggaaacaaaactttgtccaaaggtgtgacatatagtagtcataacctt |
106 |
Q |
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|||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
20387179 |
agcaccacaaattagaacataaaaataggaatatcaagacacgagatagcaaggaaacaaaactttgtc-aaaggtgtgacatatagtagtcataaccct |
20387081 |
T |
|
| Q |
107 |
aaattatattcagtaaagcatcataaaagagaaataccctcatagagacccgtttcaaatcacagatacaatccagttccgaacaagaaatcaatccgat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20387080 |
aaattatattcagtaaagcatcataaaagagaaataccctcagagagacccgtttcaaatcacaaatacaatccagttccgaacaagaaatcaatccgat |
20386981 |
T |
|
| Q |
207 |
ctaccaacaaactagt |
222 |
Q |
| |
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| |||||||||||||| |
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| T |
20386980 |
caaccaacaaactagt |
20386965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 20386411 - 20386197
Alignment:
| Q |
7 |
agcagcacagattagaacataaaattaggaacatcaagacacgagatagcaaggaaacaaaactttgtccaaaggtgtgacatatagtagtcataacctt |
106 |
Q |
| |
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|||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
20386411 |
agcaccacaaattagaacataaaaataggaatatcaagacacgagatagcaaggaaacaaaactttgtc-aaaggtgtgacatatagtagtcataaccct |
20386313 |
T |
|
| Q |
107 |
aaattatattcagtaaagcatcataaaagagaaataccctcatagagacccgtttcaaatcacagatacaatccagttccgaacaagaaatcaatccgat |
206 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
20386312 |
aaattatattctgtaaagcatcataaaagagaaataccctcaaagagacccgtttcaaatcacaaatacaatccagttccgaacaagaaatcaatccggt |
20386213 |
T |
|
| Q |
207 |
ctaccaacaaactagt |
222 |
Q |
| |
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| |||||||||||||| |
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| T |
20386212 |
caaccaacaaactagt |
20386197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 20386795 - 20386581
Alignment:
| Q |
7 |
agcagcacagattagaacataaaattaggaacatcaagacacgagatagcaaggaaacaaaactttgtccaaaggtgtgacatatagtagtcataacctt |
106 |
Q |
| |
|
|||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| | |
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| T |
20386795 |
agcaccacaaattagaacataaaaataggaatatcaagacacgagatagcaaggaaacaaaactttgtc-aaagttgtgacatatagtagtcataaccct |
20386697 |
T |
|
| Q |
107 |
aaattatattcagtaaagcatcataaaagagaaataccctcatagagacccgtttcaaatcacagatacaatccagttccgaacaagaaatcaatccgat |
206 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| | |
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|
| T |
20386696 |
aaattatattctgtaaagcatcataaaagagaaataccctcagagagacccatttcaaatcacaaatacaatccagttccgaacaagaaatcaatccggt |
20386597 |
T |
|
| Q |
207 |
ctaccaacaaactagt |
222 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
20386596 |
caaccaacaaactagt |
20386581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 20387504 - 20387349
Alignment:
| Q |
65 |
aaaactttgtccaaaggtgtgacatatagtagtcataaccttaaattatattcagtaaagcatcataaaagagaaataccctcatagagacccgtttcaa |
164 |
Q |
| |
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|||| ||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
20387504 |
aaaaatttgtccaa-ggtgtgac-tatagtagtcataaccctaaattatattcagtaaagcatcataaaagagaaataccctcagagagacccatttcaa |
20387407 |
T |
|
| Q |
165 |
atcacagatacaatccagttccgaacaagaaatcaatccgatctaccaacaaactagt |
222 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20387406 |
atcacatatacaatccagttccgaacaagaaatcaatccgatctaccaacaaactagt |
20387349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 20386035 - 20385985
Alignment:
| Q |
7 |
agcagcacagattagaacataaaattaggaacatcaagacacgagatagca |
57 |
Q |
| |
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|||| |||| |||||||||||||| |||||||||||||||| ||||||||| |
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| T |
20386035 |
agcaccacaaattagaacataaaaataggaacatcaagacatgagatagca |
20385985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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