View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_75 (Length: 235)
Name: NF4908_high_75
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_75 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 41785420 - 41785634
Alignment:
| Q |
1 |
gaattggcagaaaagttgaggaagaaaatggaagacaatatccgcttgttgcaccagaggatccacgtagcagaacaattgaacaatgagaacaaaagca |
100 |
Q |
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| T |
41785420 |
gaattggcagaaaagttgaggaagaaaatggaagacaatatccgcttgttgcaccagaggatccacgtagcagaacaattgaacaatgagaacaaaagca |
41785519 |
T |
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| Q |
101 |
gttgcaaattaacaaagataaggtacgaggaagagaacaagattcttggggagaaagtttctatttatgaagaggaactaagaaggcttaaagagggtgc |
200 |
Q |
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| T |
41785520 |
gttgcaaattaacaaagataaggtacgaggaagagaacaagattcttggggagaaagtttctatttatgaagaggaactaagaaggcttaaagagggtgc |
41785619 |
T |
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| Q |
201 |
tgctaatgttactgc |
215 |
Q |
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| T |
41785620 |
tgctaatgttactgc |
41785634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 10834683 - 10834795
Alignment:
| Q |
44 |
gcttgttgcaccagaggatccacgtagcagaacaattgaacaatgagaacaaaagcagttgcaaattaacaaagataaggtacgaggaagagaacaagat |
143 |
Q |
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| T |
10834683 |
gcttgttgcactagaggatccatttggcagaacagctgaacaatgaaaacaaaaacagttgcaaattaacaaagttaaggtatgagcaagagaacaagat |
10834782 |
T |
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| Q |
144 |
tcttggggagaaa |
156 |
Q |
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| T |
10834783 |
tctgggagagaaa |
10834795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 2281576 - 2281450
Alignment:
| Q |
23 |
agaaaatggaagacaatatccgcttgttgcaccagaggatccacgtagcagaacaattgaacaatgagaacaaaagcagttgcaaattaacaaagataag |
122 |
Q |
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||||||||||||| ||||| | | ||||| | |||||||||||||||||||||| |||| || || |||||| ||||| |||||| |||||| || |
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| T |
2281576 |
agaaaatggaagataatatacatatattgcatcggaggatccacgtagcagaacaactgaataacgaaaacaaacacagttacaaattgacaaagcaaaa |
2281477 |
T |
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| Q |
123 |
gtacgaggaagagaacaagattcttgg |
149 |
Q |
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||| |||||||||||||| || ||||| |
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| T |
2281476 |
gtatgaggaagagaacaaaatgcttgg |
2281450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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