View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_79 (Length: 228)
Name: NF4908_high_79
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_79 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 36375112 - 36374904
Alignment:
| Q |
1 |
ttgtccaagcttattctgatgactaaaatctcttgtagctgttataatcgttttaaagctgaaaaagggaagatttggatgtgtgttgctttgagcacca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36375112 |
ttgtccaagcttattctgatgactaaaatctcttgtagctgttataatcgttttaaagctgaaaaagggaagatttggatgtgtgttgctttgagcacca |
36375013 |
T |
|
| Q |
101 |
ttctcttcttcagaggaatcttggttaaattgccgcatcattttatctgaagttacaaatggcacgaggtaagatttcaatcaacttgcaaattttgata |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36375012 |
ttctcttcttcagaggaatcttggttaaattgccgcatcattttatctgaagttacaaatggcacgaggtaagatttcaatcaacttgcaaattttgata |
36374913 |
T |
|
| Q |
201 |
ggtatattt |
209 |
Q |
| |
|
||||||||| |
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|
| T |
36374912 |
ggtatattt |
36374904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 36434747 - 36434561
Alignment:
| Q |
1 |
ttgtccaagcttattctgatgactaaaatctcttgtagctgttataatcgttttaaagctgaaaaagggaagatttggatgtgtgttgctttgagcacca |
100 |
Q |
| |
|
||||||||||||||||| ||||| | ||| |||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
36434747 |
ttgtccaagcttattctcatgaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtgtgttgctttgaacaccg |
36434648 |
T |
|
| Q |
101 |
ttctcttcttcagaggaatcttggttaaattgccgcatcattttatctgaagttacaaatggcacgaggtaagatttcaatcaactt |
187 |
Q |
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|||| |||| || ||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36434647 |
ttcttttctccaaaggaatcttggtttaattgccgcaccattttatctgaagttacaaatggcatgaggtaagatttcaatcaactt |
36434561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 36428218 - 36428009
Alignment:
| Q |
1 |
ttgtccaagcttattctgatgactaaaatctcttgtagctgttataatcgttttaaagctgaaaaagggaagatttggatgtgtgttgctttgagcacca |
100 |
Q |
| |
|
||||||||||||||||| ||||| | ||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| | | || |
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| T |
36428218 |
ttgtccaagcttattctcatgaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtgtgttgctttgggtatca |
36428119 |
T |
|
| Q |
101 |
ttctcttcttcagaggaatcttggttaaattgccgcatcattttatctgaagttacaaatggcacgaggtaagatttcaatcaacttgcaaattttgat- |
199 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| | |||||||| |
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| T |
36428118 |
ttctcttccccagaggaatcttggtttggttgcggcatcattttatctgaagttacaaatgacataaggtaagatttcaatcaacttaaacattttgata |
36428019 |
T |
|
| Q |
200 |
aggtatattt |
209 |
Q |
| |
|
|||||||||| |
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|
| T |
36428018 |
aggtatattt |
36428009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 36388831 - 36388640
Alignment:
| Q |
1 |
ttgtccaagcttattctgatgactaaaatctcttgtagctgttataatcgttttaaagctgaaaaagggaagatttggatgtgtgttgctttgagcacca |
100 |
Q |
| |
|
||||||||||||||||| ||||| | ||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
36388831 |
ttgtccaagcttattctcatgaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtgtgttgctttgagcaata |
36388732 |
T |
|
| Q |
101 |
ttctcttcttcagaggaatcttggttaaattgccgcatca------ttttatctgaagttacaaatggcacgaggtaagatttcaatcaact |
186 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
36388731 |
ttctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaaatggcatgaggtaagatttcaatcaact |
36388640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 36418238 - 36418029
Alignment:
| Q |
1 |
ttgtccaagcttattctgatgactaaaatctcttgtagctgttataatcgttttaaagctgaaaaagggaagatttggatgtgtgttgctttgagcacca |
100 |
Q |
| |
|
||||||||||||||||| | || | ||| |||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||| | | || |
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|
| T |
36418238 |
ttgtccaagcttattctcaagatcacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgcgtgttgctttgggtatca |
36418139 |
T |
|
| Q |
101 |
ttctcttcttcagaggaatcttggttaaattgccgcatcattttatctgaagttacaaatggcacgaggtaagatttcaatcaacttgcaaattttgat- |
199 |
Q |
| |
|
|||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| | |||||||| |
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|
| T |
36418138 |
ttctcttccccagaggaatcttggtttggttgcggcatcattttatctgaagttacaaatgacataaggtaagatttcaatcaacttaaacattttgata |
36418039 |
T |
|
| Q |
200 |
aggtatattt |
209 |
Q |
| |
|
|||||||||| |
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|
| T |
36418038 |
aggtatattt |
36418029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 36406153 - 36405979
Alignment:
| Q |
1 |
ttgtccaagcttattctgatgactaaaatctcttgtagctgttataatcgttttaaagctgaaaaagggaagatttggatgtgtgttgctttgagcacca |
100 |
Q |
| |
|
||||||||||||||||| |||| | ||| | |||||||||| || ||||||||||||||||||||||| |||||||||||| ||||| || |||||||| |
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| T |
36406153 |
ttgtccaagcttattcttatgatcacaattttttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtctgttgtttggagcacca |
36406054 |
T |
|
| Q |
101 |
ttctcttcttcagaggaatcttggttaaattgccgcatcattttatctgaagttacaaatggcacgaggtaagat |
175 |
Q |
| |
|
||||||||| | ||||| || ||||| | ||||||||||||||||||| |||||||||||| || |||||||||| |
|
|
| T |
36406053 |
ttctcttctactgaggagtcatggtttatttgccgcatcattttatctaaagttacaaatgacatgaggtaagat |
36405979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 36398415 - 36398221
Alignment:
| Q |
5 |
ccaagcttattctgatgactaaaatctcttgtagctgttataatcgttttaaagctgaaaaagggaagatttggatgtgtgttgctttgagcaccattct |
104 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| || |||||||||| |||||||||||| ||||||||||||||| ||||||||||| |||||| |
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|
| T |
36398415 |
ccaagcttattctgatgactgcaatatcttgtagctgacattatcgttttaaggctgaaaaagggtagatttggatgtgtggtgctttgagcatcattct |
36398316 |
T |
|
| Q |
105 |
cttcttcagaggaatcttggttaaattgccgcatcattttatctgaagttacaaatggcacgaggtaagatttcaatcaacttgcaaattttgat |
199 |
Q |
| |
|
||||| ||||| |||||| || ||||| |||||| ||||| |||||| |||||| || | ||||||| | ||||| |||| || |||||||| |
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|
| T |
36398315 |
cttctgcagagtaatcttcttttgattgctgcatcactttatttgaagtcacaaataacatgcggtaagactccaatctacttacacattttgat |
36398221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 36369874 - 36369680
Alignment:
| Q |
1 |
ttgtccaagcttattctgatgactaaaatctcttgtagctgttataatcgttttaaagctgaaaaagggaagatttggatgtgtgttgctttgagcacca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||||||||||||| ||| |||||||||| || ||| |||||| |||||||| ||||||||||||| |
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|
| T |
36369874 |
ttgtccaagcttattctcatgactaaaatttgttgtagctgttataattgttctaaagctgaagaatggatgatttgaatgtgtgtagctttgagcacca |
36369775 |
T |
|
| Q |
101 |
ttctcttcttcagaggaatcttggttaaattgccgcatcattttatctgaagttacaaatggcacgaggtaagatttcaatcaacttgcaaattttga |
198 |
Q |
| |
|
|| ||| |||| |||| |||||| |||| ||| ||||||||||||||||||| | || | |||||| ||||| |||||| || || ||||||| |
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|
| T |
36369774 |
atc---tctccagacgaatattggtttgattgatgcagcattttatctgaagttacagaaggaatgaggtaggattttaatcaatttacacattttga |
36369680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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