View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_8 (Length: 497)
Name: NF4908_high_8
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 6 - 489
Target Start/End: Original strand, 38556234 - 38556717
Alignment:
| Q |
6 |
agcaaccactaatagggacattgctttggtgaataaggcttgtgactttgtgaaagatgagcactctgtgccaccaaattggaggcaag-atttgaatag |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38556234 |
agcaaccactaatagggacattgctttggtgaataaggcttgtgactttgtgaaagatgagcactctgtgccaccaaattggaggcaaatatttgaatag |
38556333 |
T |
|
| Q |
105 |
gaatatggtgaagactgaagatggacgttgggtgctggctcaacgcccacaacttgctgatactcatcatgaagacattgagcctcatctctcccagata |
204 |
Q |
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| T |
38556334 |
gaatatggtgaagactgaagatggacgttgggtgctggctcaacgcccacaacttgctgatactcatcatgaagacattgagcctcatctctcccagata |
38556433 |
T |
|
| Q |
205 |
ggactcatctcttcatctaataaataaataaaagctagttgattgaatgaatggatccatgtgataatgatatatatagagtggtaccataccgtaattt |
304 |
Q |
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| T |
38556434 |
ggactcatctcttcatct----aataaataaaagctagttgattaaatgaatggatccatgtgataatgatatatatagagtggtaccatactgtaattt |
38556529 |
T |
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| Q |
305 |
ttggagcatttgaatcttctctgaagctgagtatgctatactactatatggtattagtt--nnnnnnnntgtgcattaaagtgtttacaaatgaaa-ttc |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
38556530 |
ttggagcatttgaatcttctctgaagctgagtatgctatactactatatggtattagttaaaaaaaaaatgtgcattaaagtgtttacaaatgaaatttc |
38556629 |
T |
|
| Q |
402 |
ggaaagaaatccttttttatatgtttgttagaatataaggatgagtggtgatggaaaataacaaccgatgatcagtctttgtaatatt |
489 |
Q |
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| T |
38556630 |
ggaaagaaatccttttttatatgtttgttagaatataaggatgagtggtgatggaaaataacaaccgatgatcagtctttgtaatatt |
38556717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 6 - 362
Target Start/End: Original strand, 38548135 - 38548486
Alignment:
| Q |
6 |
agcaaccactaatagggacattgctttggtgaataaggcttgtgactttgtgaaagatgagcactctgtgccaccaaattggaggcaagatttgaatagg |
105 |
Q |
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|||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || |
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| T |
38548135 |
agcaacaactgatagggacattgctttggtgaataagtcttgtgactttgtgaaagatgaacactatgtgccaccaaattggaggcaagatttgaacaga |
38548234 |
T |
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| Q |
106 |
aatatggtgaagactgaagatggacgttgggtgctggctcaacgcccacaacttgctgatactcatcatgaagacattgagcctcatctctcccagatag |
205 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||| |||| || |||||||||||||||| |
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| T |
38548235 |
aatatggtgaagactgaagatggacgttggatgctggctcatcgcccacaagttgttgatactcatcatgaagaccttgaaccacatctctcccagatag |
38548334 |
T |
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| Q |
206 |
gactcatctcttcatctaataaataaataaaagctagttgattgaatgaatggatccatgtgataatgatatatatagagtggtaccataccgtaatttt |
305 |
Q |
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||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
38548335 |
gactcatctcttcatctaataaataaa----agctagttgattaattgaatggatccatgtgataatgatatatatagagtggtaacatattgtaatttg |
38548430 |
T |
|
| Q |
306 |
tggagcatttgaatcttctctgaagctgagtatgctatactactatatggtattagt |
362 |
Q |
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|| ||| | |||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
38548431 |
-ggtgcacgtcaatcttctctgacgctgtgtatgctatactactatatggtattagt |
38548486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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