View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_82 (Length: 219)
Name: NF4908_high_82
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_82 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 236443 - 236250
Alignment:
| Q |
19 |
tttatatgatacagtgacaagttgatnnnnnnnntggtggtcaacaattgtctagatgggaggtgcatcagttgaagtctcaaacttctctagatcttca |
118 |
Q |
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| T |
236443 |
tttatatgatacaatgacaagttgataaaaaaaatggtggtcaacaattgtctagatgggaggtgcatcagttgaagtctcaaacttctctagatcttca |
236344 |
T |
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| Q |
119 |
ctatcttcaatttcatattcaaacttgggttcgaagtacactggtaaaggttgagtaaatatgtccaatgtccatagctacctatgctactcct |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |
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| T |
236343 |
ttatcttcaatttcatattcaaacttgggttcgaagtacactagtaaaggttgagtaaatatgtccaatgcccatagctaccaatgatactcct |
236250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 750066 - 749873
Alignment:
| Q |
19 |
tttatatgatacagtgacaagttgatnnnnnnnntggtggtcaacaattgtctagatgggaggtgcatcagttgaagtctcaaacttctctagatcttca |
118 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
750066 |
tttatatgatacaatgacaagttgataaaaaaaatggtggtcaacaattgtctagatgggaggtgcatcagttgaagtctcaaacttctctagatcttca |
749967 |
T |
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| Q |
119 |
ctatcttcaatttcatattcaaacttgggttcgaagtacactggtaaaggttgagtaaatatgtccaatgtccatagctacctatgctactcct |
212 |
Q |
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| T |
749966 |
ttatcttcaatttcatattcaaacttgggttcgaagtacactagtaaaggttgagtaaatatgtccaatgcccatagctaccaatgatactcct |
749873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 801933 - 802126
Alignment:
| Q |
19 |
tttatatgatacagtgacaagttgatnnnnnnnntggtggtcaacaattgtctagatgggaggtgcatcagttgaagtctcaaacttctctagatcttca |
118 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
801933 |
tttatatgatacaatgacaagttgataaaaaaaatggtggtcaacaattgtctagatgggaggtgcatcagttgaagtctcaaacttctctagatcttca |
802032 |
T |
|
| Q |
119 |
ctatcttcaatttcatattcaaacttgggttcgaagtacactggtaaaggttgagtaaatatgtccaatgtccatagctacctatgctactcct |
212 |
Q |
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| T |
802033 |
ttatcttcaatttcatattcaaacttgggttcgaagtacactagtaaaggttgagtaaatatgtccaatgcccatagctaccaatgatactcct |
802126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 806301 - 806108
Alignment:
| Q |
19 |
tttatatgatacagtgacaagttgatnnnnnnnntggtggtcaacaattgtctagatgggaggtgcatcagttgaagtctcaaacttctctagatcttca |
118 |
Q |
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| T |
806301 |
tttatatgatacaatgacaagttgataaaaaaaatggtggtcaacaattgtctagatgggaggtgcatcagttgaagtctcaaacttctctagatcttca |
806202 |
T |
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| Q |
119 |
ctatcttcaatttcatattcaaacttgggttcgaagtacactggtaaaggttgagtaaatatgtccaatgtccatagctacctatgctactcct |
212 |
Q |
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| T |
806201 |
ttatcttcaatttcatattcaaacttgggttcgaagtacactagtaaaggttgagtaaatatgtccaatgcccatagctaccaatgatactcct |
806108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 37743221 - 37743290
Alignment:
| Q |
78 |
gaggtgcatcagttgaagtctcaaacttctctagatcttcactatcttcaatttcatattcaaacttggg |
147 |
Q |
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| T |
37743221 |
gaggtgcatcatttgaagtctcacgcttctctagaacttcattctcttcaatttcagattcaaatttggg |
37743290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 51168965 - 51169158
Alignment:
| Q |
19 |
tttatatgatacagtgacaagttgatnnnnnnnntggtggtcaacaattgtctagatgggaggtgcatcagttgaagtctcaaacttctctagatcttca |
118 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51168965 |
tttatatgatacaatgacaagttgataaaaaaaatggtggtcaacaattgtctagatgggaggtgcatcagttgaagtctcaaacttctctagatcttca |
51169064 |
T |
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| Q |
119 |
ctatcttcaatttcatattcaaacttgggttcgaagtacactggtaaaggttgagtaaatatgtccaatgtccatagctacctatgctactcct |
212 |
Q |
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| T |
51169065 |
ctatcttcaatttcacgttcaaacttgggttcgaagtacactagcaaaggttgagtaaatatgttcaatgtccatagctactaatgatactcct |
51169158 |
T |
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