View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_high_86 (Length: 202)
Name: NF4908_high_86
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_high_86 |
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| [»] scaffold0566 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 7463588 - 7463755
Alignment:
| Q |
15 |
gagatgaaagatggagagagtgattcaaatacagacaatcaacttgaattagaaggaaatgataaaataaataaagatatgtacaaacaattataacaat |
114 |
Q |
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| T |
7463588 |
gagatgaaagatggagagagtgattcaaatacagacaatcaacttgaattagaaggaaatgataaaataaataaagatatgtacaaacaattataagaat |
7463687 |
T |
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| Q |
115 |
cagggaatgaattagtgtaagtggta-ccctcatttcatgttgaaatttccaatttaagtgaccaagc |
181 |
Q |
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| T |
7463688 |
cagggaatgaattagtgtaagtggtacccctcatttcatgttgaaatttccaatttaagtgaccaagc |
7463755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 5604 - 5439
Alignment:
| Q |
15 |
gagatgaaagatggagagagtgattcaaatacagacaatcaacttgaattagaaggaaatgataaaataaataaagatatgtacaaacaattataacaat |
114 |
Q |
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| T |
5604 |
gagatgaaatatggagagagtgattcaaatacaaacaatcaacttgaattaaaaggaaatgataaaataaataaagatatgtacaaacaattataagaat |
5505 |
T |
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| Q |
115 |
cagggaatgaattagtgtaagtggta-ccctcatttcatgttgaaatttccaatttaagtgaccaa |
179 |
Q |
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| T |
5504 |
cagggaatgaattagtgtaagtggtacccctcaattcatgttgaaatttccaatttaagtgaccaa |
5439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 21126147 - 21126318
Alignment:
| Q |
15 |
gagatgaaagatggagagagtgattcaaatacagacaatcaacttgaattagaaggaaatgataaaataaataaagatatg----tacaaacaattataa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |
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| T |
21126147 |
gagatgaaagatggagagagtgattcaaatacagacaatcaacttgaattagaaggaaatgataaaataaataaagatatgtcaatgaaaagaattataa |
21126246 |
T |
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| Q |
111 |
caatcagggaatgaattagtgtaagtggta-ccctcatttcatgttgaaatttccaatttaagtgaccaagc |
181 |
Q |
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| T |
21126247 |
gaatcaaggaatgaattagtgtaagtggtacccctcatttcatgttgaaatttccaatttaagtgaccaagc |
21126318 |
T |
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