View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_12 (Length: 473)
Name: NF4908_low_12
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 15 - 460
Target Start/End: Original strand, 9471343 - 9471788
Alignment:
| Q |
15 |
agataagtccatcatcattttaacaaaacttgcatggtaataagatgaaaaattccattatttcggatctacaacacagacacctgacacgacagagaca |
114 |
Q |
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| T |
9471343 |
agataagtccatcatcattttaacaaaacttgcatggtaataagatgaaaaattccattatttcggatctataacgcagacacctgacacgacagagaca |
9471442 |
T |
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| Q |
115 |
ccgtggcatgtagatgtagacaccgatgacaaattcatttaagaaaataacaataattgaatttaaccacatctgataatgtggcgtcggacttctgtcg |
214 |
Q |
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| T |
9471443 |
ccgtggcatgtagatgtagacaccgatgacaaattcatttaagaaaataacaataattgaatttaaccacatctgataatgtggcgtcggacttctgtcg |
9471542 |
T |
|
| Q |
215 |
aacactaaacattccaataatctgaattgtcaatgctacataatttctgttttggttattaaaattgcaaaattcaaacacttgtctcagtatctttgtg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9471543 |
aacactaaacattccaataatctgaattgtcaatgctacataatttctgttttggtttttaaaattgcaaaattcaaacacttgtctcagtatctttgtg |
9471642 |
T |
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| Q |
315 |
ttttcttatggtcaaccaatccagaaattcaattcacactaaagggtctatgaaccaaaccagaaacttaaatcatcaattcctcacctagtgatgggtc |
414 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9471643 |
ttttcttatggtcaaccaatccagaaattcaaatcacactaaagggtctatgaaccaaaccagaaacttaaatcatcaattcctcacctagtgatgggtc |
9471742 |
T |
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| Q |
415 |
gatgaaccggatccgcttgtttcttctcacaaacattatttctcct |
460 |
Q |
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| T |
9471743 |
gatgaaccggatccgcttgtttcttctcacaaacattatttctcct |
9471788 |
T |
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