View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_13 (Length: 469)
Name: NF4908_low_13
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 37796746 - 37797181
Alignment:
| Q |
1 |
aaatcacgtggatctcataaa-ttttatgaaacctatataagttttaatcaataaaaagagtaaactccatctacaacaaaaccgttagttttaatcaat |
99 |
Q |
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| T |
37796746 |
aaatcacgtggatctcataaaattttatgaaacctatataagttttaatcaataaaaagagtaaacttcatctacaacaaaaccgttagttttaatcaat |
37796845 |
T |
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| Q |
100 |
aaatttttcatcaataaaagagagtaaactactgcaacaaaccccccaattttttcttttacatagaagtccatacaataacataaacttcatctatatg |
199 |
Q |
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| T |
37796846 |
aaatttttcatcaataaaagagagtaaactactgcaacaaaccccccccat-----------atagaagtccatacaataacataaacttcatctatatg |
37796934 |
T |
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| Q |
200 |
tcgattaacctatgctaaaagtggtagtgatgagatcaaagtgaaacgtgacatattttggtatagggtcatgttatagcttttaagagcacgacttaat |
299 |
Q |
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| T |
37796935 |
tcgattaacctatgctaaaagtggtagtgatgagatcaaagtgaaacgtgacat------------------gttatagcttttaagagcacgacttaat |
37797016 |
T |
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| Q |
300 |
gactagacctttatgaataatgctattacaattttggagatgaatttaccaattctcaaagtaacatgagactcgtgctttagattaactaggcaaaatt |
399 |
Q |
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| T |
37797017 |
gactagacctttatgaataatgctattacaattttggagatgaatttaccaattctcaaagtaacatgagactcgtgctttagattaactaggcaaaatt |
37797116 |
T |
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| Q |
400 |
tggttttccttttttcttgtatgcaggaggaaaagaccaaagattacttggaaggtgctttttat |
464 |
Q |
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| T |
37797117 |
tggttttccttttttcttgtatgcaggaggaaaagaccaaagattacttggaaggtgctttttat |
37797181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 460
Target Start/End: Original strand, 37788850 - 37788948
Alignment:
| Q |
361 |
taacatgagactcgtgctttagattaactaggcaaaatttggttttccttttttcttgtatgcaggaggaaaagaccaaagattacttggaaggtgcttt |
460 |
Q |
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|||||||||| |||||| |||||||||||||| ||||| | |||| || ||||| ||||||||| | ||||||||||||||||| |||| ||||||| |
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| T |
37788850 |
taacatgaga-tcgtgcagtagattaactaggccaaattcgtttttttttctttctgttatgcaggaaggaaagaccaaagattactcggaatgtgcttt |
37788948 |
T |
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