View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4908_low_17 (Length: 422)

Name: NF4908_low_17
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4908_low_17
NF4908_low_17
[»] chr8 (4 HSPs)
chr8 (186-415)||(35388018-35388247)
chr8 (1-89)||(35387751-35387839)
chr8 (1-74)||(38587837-38587910)
chr8 (186-246)||(35384172-35384232)
[»] chr4 (2 HSPs)
chr4 (1-95)||(30333137-30333231)
chr4 (4-89)||(33266565-33266650)
[»] chr1 (1 HSPs)
chr1 (1-89)||(7054626-7054713)
[»] chr7 (2 HSPs)
chr7 (7-89)||(32136083-32136165)
chr7 (1-86)||(39999023-39999108)
[»] chr2 (3 HSPs)
chr2 (3-74)||(41287947-41288018)
chr2 (1-73)||(4473594-4473666)
chr2 (1-89)||(31840280-31840368)
[»] chr5 (1 HSPs)
chr5 (6-89)||(13376794-13376879)
[»] chr3 (1 HSPs)
chr3 (49-89)||(30265717-30265757)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 186 - 415
Target Start/End: Original strand, 35388018 - 35388247
Alignment:
Q  186 ggtactttaagttgtgtaattgcagatacacccttcacatttgaacatgcatttcttctcacgactaaccatacaaaaataattataatttttattttat 285  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35388018 ggtactttaagttgtgtaattgctgatacacccttcacatttgaacatgcatttcttctcacgactaaccatacaaaaataattataatttttattttat 35388117  T
Q  286 aatgccgatgattaacatacataaccaaaatgtatacatattcggagaaagtgaaaatcaataactcaaaatgtgatgcatgccttcgatctttcattca 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35388118 aatgccgatgattaacatacataaccaaaatgtatacatattcggagaaagtgaaaatcaataactcaaaatgtgatgcatgccttcgatctttcattca 35388217  T
Q  386 tgttggaagatttgttcattgtgacctatg 415  Q
    ||||||||||||||||||||||||||||||    
T  35388218 tgttggaagatttgttcattgtgacctatg 35388247  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 35387751 - 35387839
Alignment:
Q  1 aatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||||||||||| ||||||||||||||    
T  35387751 aatgctagaacaaaatttatgttcttcaaacattttgttgggtccatcattgtcacgtgcggattcaagaacaaccatgtagttttact 35387839  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 38587910 - 38587837
Alignment:
Q  1 aatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaa 74  Q
    |||||||||| || ||||||||||||||| ||||||| ||||||||| |||||||| |||||||||||||||||    
T  38587910 aatgctagaagaagatttatgttcttcaagcattttggtgggtccatcattgccacttggggattcaagaacaa 38587837  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 35384172 - 35384232
Alignment:
Q  186 ggtactttaagttgtgtaattgcagatacacccttcacatttgaacatgcatttcttctca 246  Q
    ||||| |||| ||||||||||||| |||||||||| |||||| |||||||| |||||||||    
T  35384172 ggtacgttaaattgtgtaattgcatatacaccctttacattttaacatgcacttcttctca 35384232  T

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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 30333231 - 30333137
Alignment:
Q  1 aatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttacttgaatg 95  Q
    |||||||||| |||  ||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||||||| |||||    
T  30333231 aatgctagaaaaaagcttatgttcttcaagcattttggtgggtccatcattgccacatgaggattcaagaacaatcatatagttttactcgaatg 30333137  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 33266650 - 33266565
Alignment:
Q  4 gctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 89  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||| |||| || ||||| | ||||||||||  |||||||||||||    
T  33266650 gctagaacaaaatttatgtttttcaagcattttggtgggtccatcattgtcatatgggaagtcaagaacaaatatgtagttttact 33266565  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 7054713 - 7054626
Alignment:
Q  1 aatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 89  Q
    ||||||||||||| |||| |||||||||| ||||  || |||||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  7054713 aatgctagaacaagatttgtgttcttcaagcattgggt-gggtccatcattgccacatgtggattcaagaacaaccatgtagttttact 7054626  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 32136165 - 32136083
Alignment:
Q  7 agaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 89  Q
    ||||||||||||||||||||||| ||||||| ||||||||  |||| || ||| |||||||||||||| |||||| |||||||    
T  32136165 agaacaaaatttatgttcttcaagcattttggtgggtccaccattgtcatatgaggattcaagaacaaccatgtaattttact 32136083  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 39999108 - 39999023
Alignment:
Q  1 aatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagtttt 86  Q
    ||||||||||||| |||| | |||||||| ||||||| ||||| ||| ||| |||||||| ||||||||||||||||| |||||||    
T  39999108 aatgctagaacaagatttgtattcttcaagcattttggtgggttcatcattaccacatggagattcaagaacaatcatatagtttt 39999023  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 41287947 - 41288018
Alignment:
Q  3 tgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaa 74  Q
    ||||| ||||| ||||||||||||||| ||||||| ||||||||| ||||||||||| ||||| ||||||||    
T  41287947 tgctaaaacaagatttatgttcttcaagcattttggtgggtccatcattgccacatgaggatttaagaacaa 41288018  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4473666 - 4473594
Alignment:
Q  1 aatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaaca 73  Q
    ||||||| || || |||||||||||| || ||||||| ||||||||| ||||||| |||||||||||||||||    
T  4473666 aatgctaaaataagatttatgttctttaagcattttgatgggtccatcattgccatatggggattcaagaaca 4473594  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31840280 - 31840368
Alignment:
Q  1 aatgctagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggggattcaagaacaatcatgtagttttact 89  Q
    ||||||||||||| |||||||| |||||||||||||  ||| ||||| ||||   ||||  ||||||||||||| ||||||||||||||    
T  31840280 aatgctagaacaagatttatgtccttcaaacattttagtggatccatcattgatccatgaagattcaagaacaaccatgtagttttact 31840368  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 13376794 - 13376879
Alignment:
Q  6 tagaacaaaatttatgttcttcaaacattttgttgggtccattattgccacatggg--gattcaagaacaatcatgtagttttact 89  Q
    |||||||||||||||||| |||||| |||||| ||||||||| |||| | ||||||   |||||||||||| ||||||||||||||    
T  13376794 tagaacaaaatttatgtttttcaaatattttggtgggtccatcattgtctcatgggatcattcaagaacaaccatgtagttttact 13376879  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 30265757 - 30265717
Alignment:
Q  49 attgccacatggggattcaagaacaatcatgtagttttact 89  Q
    |||||||||||| ||||||||||||| ||||||||||||||    
T  30265757 attgccacatggcgattcaagaacaaccatgtagttttact 30265717  T

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