View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4908_low_2 (Length: 661)

Name: NF4908_low_2
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4908_low_2
NF4908_low_2
[»] chr4 (4 HSPs)
chr4 (17-649)||(27731427-27732064)
chr4 (229-523)||(27738593-27738887)
chr4 (534-646)||(27738450-27738562)
chr4 (245-279)||(51220042-51220076)
[»] chr3 (2 HSPs)
chr3 (97-642)||(21249569-21250098)
chr3 (31-77)||(21249473-21249519)
[»] chr1 (8 HSPs)
chr1 (83-411)||(21155078-21155407)
chr1 (227-585)||(21160430-21160779)
chr1 (534-631)||(21154905-21155002)
chr1 (299-355)||(21074349-21074405)
chr1 (224-351)||(21078992-21079119)
chr1 (17-77)||(21155455-21155515)
chr1 (227-279)||(21074290-21074342)
chr1 (384-424)||(21074459-21074499)
[»] chr6 (3 HSPs)
chr6 (575-642)||(3073457-3073524)
chr6 (323-428)||(14809296-14809402)
chr6 (17-77)||(3073644-3073704)


Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 17 - 649
Target Start/End: Complemental strand, 27732064 - 27731427
Alignment:
Q  17 tgatcatggtcaggtacataaaaagttcaaagtttcaagcaacgtggataatgacaagatcaaggtgaaggagaataataataataacagtaaaaagagt 116  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27732064 tgatcatggtcaggtacataaaaagttcaaagtttcaagcaatgtggataatgacaagatcaaggtgaaggagaataataataataacagtaaaaagagt 27731965  T
Q  117 ttgtggctgatattcaagattaaagacaacaaggtctggcaatgcatccaaggtgaagaaaagaagaaaaataatgaaggcggaggaactgggatggaac 216  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27731964 ttgcggctgatattcaagattaaagacaacaaggtctggcaatgcatccaaggtgaagaaaagaagaaaaataatgaaggcggaggaactgggatggaac 27731865  T
Q  217 agagttctaatgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaacagaggatgtggcacatgaatgaaaccaattagtctt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27731864 agagttctaatgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaacagaggatgtggcacatgaatgaaaccaattagtctt 27731765  T
Q  317 tcatcgtcttatttaggtcattttaactcattgttctatgcaaaggaaatgatttgtttttccattgatattctgaatgtgttcacagatgtaaactcaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27731764 tcatcgtcttatttaggtcattttaactcattgttctatgcaaagaaaatgatttgtttttccattgatattctgaatgtgttcacagatgtaaactcaa 27731665  T
Q  417 tagaggagtatagtcatttgttatttcatgaacacccttcaag-----nnnnnnnnncttttccattaaaacaattgaatgagttggatgtcctttttct 511  Q
     ||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||| |||| |||||||||||||    
T  27731664 cagaggagtatagtcatttgttatttcatgaacacccttcaagtttttttttttttttttttccattaaaacaattgaatgtgttgcatgtcctttttct 27731565  T
Q  512 tttccatatacaattaacatggtattggtgattagtgtttaaatatcatttgaactgattaacatgataattggaagttttgtagttttctatttacaat 611  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27731564 tttccatatacaattaacatgatattggtgattagtgtttaaatatcatttgaaccgattaacatgataattggaagttttgtagttttctatttacaat 27731465  T
Q  612 tcaagatctaatattgtgctcaattgaatcagtgatga 649  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27731464 tcaagatctaatattgtgctcaattgaatcagtgatga 27731427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 229 - 523
Target Start/End: Complemental strand, 27738887 - 27738593
Alignment:
Q  229 aattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaacagaggatgtggcacatgaatgaaaccaattagtctttcatcgtcttat 328  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||  ||||||||||||||||||| ||||||||| |||||||    
T  27738887 aattgaagcaaaaaggagttgttatgaattttgatttgaatgcgcttccaatagaagatgtttcacatgaatgaaaccaattggtctttcattgtcttat 27738788  T
Q  329 ttaggtcattttaactcattgttctatgcaaaggaaatgatttgtttttccattgatattctgaatgtgttcacagatgtaaactcaatagaggagtata 428  Q
    ||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27738787 ttaggtcatttgaactcattgttctatgcaaatgtaatgatttgtttttccattgatattctgaatgtgttcacagatggaaactcaatagaggagtata 27738688  T
Q  429 gtcatttgttatttcatgaacacccttcaagnnnnnnnnncttttccattaaaacaattgaatgagttggatgtcctttttcttttccatataca 523  Q
    || ||||||||||||||||||||||||||||          || ||||||||| ||||||||||||||| ||||||||||||||||| |||||||    
T  27738687 gttatttgttatttcatgaacacccttcaagttttatttatttctccattaaagcaattgaatgagttgaatgtcctttttcttttctatataca 27738593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 534 - 646
Target Start/End: Complemental strand, 27738562 - 27738450
Alignment:
Q  534 tattggtgattagtgtttaaatatcatttgaactgattaacatgataattggaagttttgtagttttctatttacaattcaagatctaatattgtgctca 633  Q
    |||||||| ||||||||| |||||||||||| |||||| |||||||||| | ||||||||||||||||||||||||||| |||||||| |||||||||||    
T  27738562 tattggtgcttagtgtttgaatatcatttgagctgattcacatgataatcgaaagttttgtagttttctatttacaattaaagatctattattgtgctca 27738463  T
Q  634 attgaatcagtga 646  Q
    ||||||| |||||    
T  27738462 attgaattagtga 27738450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 51220076 - 51220042
Alignment:
Q  245 agttgttatgaattttgatttgaatgagcttccaa 279  Q
    |||||||||||||||||||| ||||||||||||||    
T  51220076 agttgttatgaattttgattcgaatgagcttccaa 51220042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 97 - 642
Target Start/End: Original strand, 21249569 - 21250098
Alignment:
Q  97 ataataacagtaaaaagagtttgtggctgatattcaagattaaagacaacaaggtctggcaatgcatccaaggtgaagaaaagaagaaaaataatgaagg 196  Q
    |||||||||||||||||||||||    || ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  21249569 ataataacagtaaaaagagtttgcta-tgctatccaagattaaagacaacaaggtctggcaatgcagccaagatgaagaaaagaagaaaaataatgaagg 21249667  T
Q  197 cggaggaactgggatggaacagagttctaatgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaacagaggatgtggcacat 296  Q
     || | || ||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||    
T  21249668 tggcgaaaatgggatggaacagagttttaatgaattgaatc-aaaaggagttgttatgaattttgatttgaatgagcttcaaacagaagatgttgcacat 21249766  T
Q  297 gaatgaaaccaattagtctttcatcgtcttatttaggtcattttaactcattgttctatgcaaaggaaatgatttgtttttccattgatattctgaatgt 396  Q
    |||||||||||||| || |||||| || ||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||| ||||||||    
T  21249767 gaatgaaaccaattggtttttcattgtattatttaggtcatttgaactaattgttctttgtaaaggaaatgatttgtttttccattgatatcctgaatgt 21249866  T
Q  397 gttcacagatgtaaactcaatagaggagtatagtcatttgttatttcatgaacacccttcaagnnnnnnnnncttt--tccattaaaacaattgaatgag 494  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||          |||  |||||||||  ||||| |||||    
T  21249867 gttcacaaatgtaaacttaatagaggagtatagttatttgttatttcatgaacacctttcaagttttatttatttttctccattaaagaaattggatgag 21249966  T
Q  495 ttggatgtcctttttcttttccatatacaattaacatggtattggtgattagtgtttaaatatcatttgaactgattaacatgataattggaagttttgt 594  Q
    ||||||||||||||||||||| ||||| |                || ||||||||| |||||||||||||||| ||||| ||||||||||||||||| |    
T  21249967 ttggatgtcctttttcttttcaatataaa----------------tgcttagtgtttgaatatcatttgaactgtttaacgtgataattggaagttttat 21250050  T
Q  595 agttttctatttacaattcaagatctaatattgtgctcaattgaatca 642  Q
    |||||||||||||||||| |||||||| |||||||| |||||||||||    
T  21250051 agttttctatttacaattgaagatctattattgtgcacaattgaatca 21250098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 21249473 - 21249519
Alignment:
Q  31 tacataaaaagttcaaagtttcaagcaacgtggataatgacaagatc 77  Q
    ||||||||||| |||||| ||||||||| ||||||||||| ||||||    
T  21249473 tacataaaaagctcaaagcttcaagcaatgtggataatgaaaagatc 21249519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 83 - 411
Target Start/End: Complemental strand, 21155407 - 21155078
Alignment:
Q  83 gaaggagaataataataataacagtaaaaagagtttgtggctgatattcaagattaaagacaacaaggtctggcaatgcatccaaggtgaagaaaagaag 182  Q
    |||||| |||||| |||||||| ||||||||||||||| | ||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||    
T  21155407 gaaggataataatgataataaccgtaaaaagagtttgttgttgagattcaaggttaaagacaacaaggtcgtgcaatgcatccaaggtgaagaaaagaag 21155308  T
Q  183 aaaaataatgaaggcggagg--aactgggatggaacagagttctaatgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaac 280  Q
    |||||||| ||||| || |   ||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21155307 aaaaataacgaaggtggtgtgaaacagggagggaacatagttctaatgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaac 21155208  T
Q  281 agaggatgtggcacatgaatgaaaccaattagtctttcatcgtcttatttaggtcattttaactcattgttctatgcaaaggaaatgatttgtttttcca 380  Q
     || ||||| |||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||    
T  21155207 tgaagatgttgcacatgaatgaaaccaattggtc-ttcattgtcttatttaggtcatttaaactcattggtttatgcaaaggaaatgatttgtttttcca 21155109  T
Q  381 ttgatattctgaatgtgttcacagatgtaaa 411  Q
    || |||||| |||| ||||||||||||||||    
T  21155108 tttatattcggaatatgttcacagatgtaaa 21155078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 227 - 585
Target Start/End: Complemental strand, 21160779 - 21160430
Alignment:
Q  227 tgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaacagaggatgtggcacatgaatgaaaccaattagtctttcatcgtctt 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||  || |||||| ||||||||| ||||||||| |||||    
T  21160779 tgaattgaagccaaaaggagttgttatgaattttgatttgaatgagtttccaacagaagatgtttcagatgaataaaaccaattggtctttcattgtctt 21160680  T
Q  327 atttaggtcattttaactcattgttctatgcaaaggaaatgatttgtttttccattgatattctgaatgtgttcacagatgtaaactcaatagaggagta 426  Q
      ||||||||||| ||||||||||| |||||||||||||||||||||           || ||||||||||||| ||||||||||||||||||| |||||    
T  21160679 ggttaggtcatttgaactcattgttttatgcaaaggaaatgatttgt-----------tagtctgaatgtgttcgcagatgtaaactcaatagatgagta 21160591  T
Q  427 tagtcatttgttatttcatgaacacccttcaagnnnnnnnnncttt--tccattaaaacaattgaatgagttggatgtcctttttcttttccatatacaa 524  Q
    | || |||||||||||||||||||| |||||||          |||  ||||||||| ||||||||||||||||||||||||||||||||| |||||  |    
T  21160590 tggttatttgttatttcatgaacactcttcaagttttatttatttttctccattaaagcaattgaatgagttggatgtcctttttcttttctatata-ga 21160492  T
Q  525 ttaacatggta-ttggtgattagtgtttaaatatcatttgaactgattaacatgataattgg 585  Q
    |  | |   || |||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  21160491 tgcatagcttacttggtgcttagtgtttgaatatcatttgaactgattaacatgataattgg 21160430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 534 - 631
Target Start/End: Complemental strand, 21155002 - 21154905
Alignment:
Q  534 tattggtgattagtgtttaaatatcatttgaactgattaacatgataattggaagttttgtagttttctatttacaattcaagatctaatattgtgct 631  Q
    ||||||||  || ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||    
T  21155002 tattggtgtctattgtttgaatatcatttaaacttattaacatgataattggaagttttgtagttttctatttacgattgaagatctattattgtgct 21154905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 21074349 - 21074405
Alignment:
Q  299 atgaaaccaattagtctttcatcgtcttatttaggtcattttaactcattgttctat 355  Q
    ||||||||||||||||||||||  |||||||||||| |||| |||||||||||||||    
T  21074349 atgaaaccaattagtctttcattttcttatttaggtgatttgaactcattgttctat 21074405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 224 - 351
Target Start/End: Original strand, 21078992 - 21079119
Alignment:
Q  224 taatgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaacagaggatgtggcacatgaatgaaaccaattagtctttcatcgt 323  Q
    ||||||||||||| || ||  |||||||| ||||||||||||||| |||||||||||| | | ||| ||| |||||||    ||| | |||||||||  |    
T  21078992 taatgaattgaagtcagaaaaagttgttaggaattttgatttgaacgagcttccaacaaatggtgttgcagatgaatgtgttcaactggtctttcatttt 21079091  T
Q  324 cttatttaggtcattttaactcattgtt 351  Q
    || |||||||| |||| |||||||||||    
T  21079092 ctaatttaggtgatttgaactcattgtt 21079119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 21155515 - 21155455
Alignment:
Q  17 tgatcatggtcaggtacataaaaagttcaaagtttcaagcaacgtggataatgacaagatc 77  Q
    ||||||||||||  ||||| ||||| |||||| ||||||||| ||||||||||||||||||    
T  21155515 tgatcatggtcatctacatgaaaagctcaaagcttcaagcaatgtggataatgacaagatc 21155455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 21074290 - 21074342
Alignment:
Q  227 tgaattgaagccaaaaggagttgttatgaattttgatttgaatgagcttccaa 279  Q
    |||||||||| || |  ||||||||||||||||||||||||||||| ||||||    
T  21074290 tgaattgaaggcagatagagttgttatgaattttgatttgaatgagattccaa 21074342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 384 - 424
Target Start/End: Original strand, 21074459 - 21074499
Alignment:
Q  384 atattctgaatgtgttcacagatgtaaactcaatagaggag 424  Q
    ||||||||||| |||||||| ||||||||||||| ||||||    
T  21074459 atattctgaatctgttcacaaatgtaaactcaatggaggag 21074499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 575 - 642
Target Start/End: Complemental strand, 3073524 - 3073457
Alignment:
Q  575 atgataattggaagttttgtagttttctatttacaattcaagatctaatattgtgctcaattgaatca 642  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  3073524 atgataattggaagttttgtagttttctatttgcaattgaagatctattattgtgctcaattgaatca 3073457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 323 - 428
Target Start/End: Original strand, 14809296 - 14809402
Alignment:
Q  323 tcttatttaggtcattttaactcattgttctatgcaaaggaaatgatttgttttt-ccattgatattctgaatgtgttcacagatgtaaactcaatagag 421  Q
    |||||| ||||| |||| || ||||||||||||| ||||||||||||| |||||| |||| |||||||||||||||| |||| |||||||||||||| ||    
T  14809296 tcttatctaggtgatttgaagtcattgttctatggaaaggaaatgattggttttttccatcgatattctgaatgtgtacacaaatgtaaactcaataaag 14809395  T
Q  422 gagtata 428  Q
    || ||||    
T  14809396 gaatata 14809402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 3073704 - 3073644
Alignment:
Q  17 tgatcatggtcaggtacataaaaagttcaaagtttcaagcaacgtggataatgacaagatc 77  Q
    ||||||||||||  |||||||||||||||||| |||||  |  ||||||||||||||||||    
T  3073704 tgatcatggtcacctacataaaaagttcaaagcttcaacaattgtggataatgacaagatc 3073644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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