View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4908_low_25 (Length: 381)
Name: NF4908_low_25
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_25 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 47 - 366
Target Start/End: Original strand, 26963223 - 26963542
Alignment:
| Q |
47 |
ccgcaacataattttatgataaacccgatttttatactcgaaatattttcaaaacattcaatgtggccctcaaaagattgttatataaatttggtccaat |
146 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
26963223 |
ccgcaacataattttatgataaaccccatttttatactcgaaatattttcaaaacattcaatgtggccttcaaaagattgttatataaattcggtccaat |
26963322 |
T |
|
| Q |
147 |
gatattttaacagaagttactgcgtatagcggcaaaattgatgtcatctcaaaaatcatcctagttaatatttccaatgtcaaattgatgttcnnnnnnn |
246 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26963323 |
gatattttaacaaaagttactgcgtatagcggcaaaattgatgtcatgtcaaaaatcatcctagttaatatttccaatgtcaaattgatgttcaaaaaaa |
26963422 |
T |
|
| Q |
247 |
tcttttaaggatcaaactagagatttaaacatacaccatatataatattgccacttatagttataactaacaaatataattaaacaacatggaaccttcc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26963423 |
tcttttaaggatcaaactagagatttaaacatacaccatatatactattgccacttatagttataactaacaaatataattaaacaacatggaaccttcc |
26963522 |
T |
|
| Q |
347 |
ttttaccaaaccatgttgct |
366 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
26963523 |
ttttaccaaaccatgttgct |
26963542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 33 - 366
Target Start/End: Complemental strand, 26940843 - 26940511
Alignment:
| Q |
33 |
agcagccaaagataccgcaacataattttatgataaacccgatttttatactcgaaatattttcaaaacattcaatgtggccctcaaaagattgttatat |
132 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||| |
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|
| T |
26940843 |
agcagccaaagatgccgcaacataattttatgataaaccccatttttatactcgaaatattctcaaaa--ttcaatgtggccctcaaaagatttttgtat |
26940746 |
T |
|
| Q |
133 |
aaatttggtccaatgatattttaacagaagttactgcgtatagcggcaaaattgatgtcatctcaaaaatcatcctagttaatatttccaatgtcaaatt |
232 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| |
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|
| T |
26940745 |
aaatttggtccaatgatattttaacaaaagttactgcgcatagaggcaaaattgatgtcatgtcaaaaatcatcatagttaatatttccaaggtcaaatt |
26940646 |
T |
|
| Q |
233 |
gatgttcnnnnnnntcttttaaggatcaaactagaga-tttaaacatacaccatatataatattgccacttatagttataactaacaaatataattaaac |
331 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26940645 |
gatgttcaaaaaaatcttttaaggatcaaacaggagattttcaacatacaccatatataatattgccacttatagttataactaacaaatataattaaac |
26940546 |
T |
|
| Q |
332 |
aacatggaaccttccttttaccaaaccatgttgct |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
26940545 |
aacatggaaccttccttttaccaaaccatgttgct |
26940511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 366
Target Start/End: Original strand, 26930265 - 26930614
Alignment:
| Q |
14 |
atattatccgtacaattgtagcagccaaagataccgcaacataattttatgataaacccgatttttatactcgaaatattttcaaaacattcaatgtggc |
113 |
Q |
| |
|
||||| || |||||||||||||||||| |||| || ||||||||||||||| ||||||| ||| | |||||||||| |||||||||||||||||||| || |
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|
| T |
26930265 |
atattctctgtacaattgtagcagccagagatgccccaacataattttatggtaaaccc-attgtgatactcgaaagattttcaaaacattcaatgttgc |
26930363 |
T |
|
| Q |
114 |
cctcaaaagattgttatataaatttggtccaatgatattttaacagaagttactgcgtatagcggcaaaattgatgtcatctcaaaaatcatcctagtta |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| || |||||||||||||| ||| |
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|
| T |
26930364 |
cctcaaaagattgttatataaatttggtccaatgatattttaacaaaagttactgcttacagcggcaaaattgatgttatgtcaaaaatcatccttgtt- |
26930462 |
T |
|
| Q |
214 |
atatttccaatgtcaaattgatgttcnnnnnnntcttttaaggatcaaactagagatttaaacatacaccatatataatattgccacttatagttataac |
313 |
Q |
| |
|
|||||||||| |||| ||| ||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| | |
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| T |
26930463 |
atatttccaaggtcatattagtgttcaaaaaaa-cttttaaggatcaaagtagagatttacacatacaccatatataatattgccacttataattatatc |
26930561 |
T |
|
| Q |
314 |
taacaaatataattaaacaacatggaaccttccttttaccaaaccatgttgct |
366 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| |||||| |||||||| |||| |
|
|
| T |
26930562 |
taacaaatataattaaacaacaggaaaccttctttttactaaaccatgctgct |
26930614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 23 - 366
Target Start/End: Original strand, 36673166 - 36673514
Alignment:
| Q |
23 |
gtacaattgtagcagccaaagataccgcaacataattttatgataaacccgatttttatactcgaaatattttcaaaacattcaatgtggccctcaaaag |
122 |
Q |
| |
|
|||||||| ||| ||||| |||| || ||||||||||||||| ||||||| ||||| ||| | |||| ||||||||||| |||||| ||||||||||||| |
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|
| T |
36673166 |
gtacaattatagaagccagagatgccccaacataattttatggtaaaccccattttgatatttgaaagattttcaaaaccttcaatctggccctcaaaag |
36673265 |
T |
|
| Q |
123 |
attgttatataaatttggtccaatgatattttaacagaagttactgcgtatagcggcaaaattgatgtcatct------caaaaatcatcctagttaata |
216 |
Q |
| |
|
||| | |||||||||||||| |||||||||||||| | || |||| || | ||| ||||||||||||| | ||||||| ||||| ||||||| |
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|
| T |
36673266 |
attatgatataaatttggtcggatgatattttaacaaatgtatctgcttacacaggccaaattgatgtcatgtactgaccaaaaat-atccttgttaata |
36673364 |
T |
|
| Q |
217 |
tttccaatgtcaaattgatgttcnnnnnnntcttttaaggatcaaactagagatttaaacatacaccatatataatattgccacttatagttataactaa |
316 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| | |||||||| || ||||||||||||||||||||||| |||| ||||| |||| |
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|
| T |
36673365 |
tttccaaggtcaaattgatgttaaaaaaaagcttttaaggatcaaattggagatttacacgtacaccatatataatattgccacctatatttatagctaa |
36673464 |
T |
|
| Q |
317 |
caaatataattaaacaacatggaaccttccttttaccaaaccatgttgct |
366 |
Q |
| |
|
||||||||||||||| ||| | |||||||| ||||| |||||||| |||| |
|
|
| T |
36673465 |
caaatataattaaactacaagaaaccttccatttactaaaccatgctgct |
36673514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 27564558 - 27564663
Alignment:
| Q |
50 |
caacataattttatgataaacccgatttttatactcgaaatattttcaaaacattcaatgtggccctcaaaagattgttatataaatttggtccaatgat |
149 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||||| ||| ||||||| || ||||||| |||||||||| |||| |||||||||||| ||||| |||| |
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|
| T |
27564558 |
caacgtaattttatgataaaccccattttgatactc-aaagattttcataaaattcaatatggccctcaa--gattattatataaatttcgtccactgat |
27564654 |
T |
|
| Q |
150 |
attttaaca |
158 |
Q |
| |
|
||||||||| |
|
|
| T |
27564655 |
attttaaca |
27564663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 54 - 351
Target Start/End: Original strand, 29413826 - 29414128
Alignment:
| Q |
54 |
ataattttatgataaacccgatttttatactcgaaatattttcaaaacattcaatgtggccctcaaaagattgttatataaatttggtccaatgatattt |
153 |
Q |
| |
|
|||| |||||| ||||||| |||| |||||||||| |||||||||||||||||| || ||||||||||||| ||| ||| | ||||||||||||||||| |
|
|
| T |
29413826 |
ataactttatggtaaaccccatttagatactcgaaagattttcaaaacattcaatttgtccctcaaaagattattaaatagagttggtccaatgatattt |
29413925 |
T |
|
| Q |
154 |
taacagaagttactgcgtatagcggcaaaattgatgtcatct-----caaaaatcatcctagttaatatttccaatgtcaaattgatgttcnnnnnnntc |
248 |
Q |
| |
|
||||| || ||||||| || || || ||||||||||||| | |||||| ||| | ||||||||| || |||||||| |||||| || |
|
|
| T |
29413926 |
taacaaaaattactgcatacaggggacaaattgatgtcatgtagtgacaaaaaccattccttttaatattttcatggtcaaattcatgttcgaaaaaatc |
29414025 |
T |
|
| Q |
249 |
ttttaaggatcaaactagagatttaaacatacaccatatataatattgccacttatagttataactaacaaatataattaaacaacatggaaccttcctt |
348 |
Q |
| |
|
||| |||||||||| | |||||||| ||||||||||||||||||| | || |||||| |||||||||| |||||||||||||||| | | |||||||||| |
|
|
| T |
29414026 |
tttgaaggatcaaattggagatttacacatacaccatatataatactaccgcttataattataactaagaaatataattaaacaaaaggaaaccttcctt |
29414125 |
T |
|
| Q |
349 |
tta |
351 |
Q |
| |
|
||| |
|
|
| T |
29414126 |
tta |
29414128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 24202235 - 24202133
Alignment:
| Q |
23 |
gtacaattgtagcagccaaagataccgcaacataattttatgataaacccgatttttatactcgaaatattttcaaaacattcaatgtggccctcaaaag |
122 |
Q |
| |
|
|||||||| ||||||||| |||| || |||||| |||||| | ||||||| ||||| ||||| |||| |||||||||||||| || || |||||||||| |
|
|
| T |
24202235 |
gtacaattctagcagccagagatgccccaacatgattttaaggtaaaccccattttgatactagaaagattttcaaaacattttatttgtccctcaaaag |
24202136 |
T |
|
| Q |
123 |
att |
125 |
Q |
| |
|
||| |
|
|
| T |
24202135 |
att |
24202133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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