View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_30 (Length: 352)
Name: NF4908_low_30
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 21372334 - 21372678
Alignment:
| Q |
1 |
aaaaacctaataaacattttttctattttctaacaaatctttaatgaatggatnnnnnnncaggtttaacctaaagttacacacagctggaatcattgct |
100 |
Q |
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| T |
21372334 |
aaaaacctaataaacattttttctattttctaacaaatctttaatgaatggataaaaaaacaggtttaacctaaagttacacacagctggaatcattgct |
21372433 |
T |
|
| Q |
101 |
gcatcctttggaatggcaaacatagttgctcgtccattcggaggatatgcatcagatgttgcagcaagattattcggcatgcgaggaagattatggacac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
21372434 |
gcatcctttggaatggcaaacatagttgctcgtccattcggaggatatgcatcagatgttgcagcaagattattcggaatgcgaggaagaatatggacac |
21372533 |
T |
|
| Q |
201 |
tctggatcctccaaaccctaggaggggttttctgcatatggttaggacgtgcgaatacacttccgatcgcagtactatccatgattctcttctcagttgg |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21372534 |
tctggatcctccaaaccctaggaggagttttctgcatatggttaggacgtgcgaatacacttccgatcgcagtactatccatgatcctcttctcagttgg |
21372633 |
T |
|
| Q |
301 |
agcacaagcagcatgtggtgcaacatttggaatcattccattcat |
345 |
Q |
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| T |
21372634 |
agcacaagcagcatgtggtgcaacatttggaatcattccattcat |
21372678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 21385223 - 21384879
Alignment:
| Q |
1 |
aaaaacctaataaacattttttctattttctaacaaatctttaatgaatggatnnnnnnncaggtttaacctaaagttacacacagctggaatcattgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21385223 |
aaaaacctaataaacattttttctattttctaacaaatctttaatgaatggataaaaaaacaggtttaacctaaagttacacacagctggaatcattgct |
21385124 |
T |
|
| Q |
101 |
gcatcctttggaatggcaaacatagttgctcgtccattcggaggatatgcatcagatgttgcagcaagattattcggcatgcgaggaagattatggacac |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21385123 |
gcatcctttggaatggcaaacatagttgctcgtccattcggtggatatgcatcagatgttgcagcaagattattcggtatgcgaggaagattatggacac |
21385024 |
T |
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| Q |
201 |
tctggatcctccaaaccctaggaggggttttctgcatatggttaggacgtgcgaatacacttccgatcgcagtactatccatgattctcttctcagttgg |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21385023 |
tctggatcctccaaaccctaggaggagttttctgcatatggttaggacgtgcgaatacacttccgatcgcagtactatccatgatcctcttctcagttgg |
21384924 |
T |
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| Q |
301 |
agcacaagcagcatgtggtgcaacatttggaatcattccattcat |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21384923 |
agcacaagcagcatgtggtgcaacatttggaatcattccattcat |
21384879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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