View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4908_low_34 (Length: 336)
Name: NF4908_low_34
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 37726972 - 37727279
Alignment:
| Q |
10 |
atgaaacacatcggattccaatttcaggnnnnnnnntccagaaaagaatgaaagacaaaaaggaataaatttgcatgctaagtaacagaaccacaaacca |
109 |
Q |
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| T |
37726972 |
atgaaacacatcggattccaatttcaggaaaaaaaatccagaaaagaatggaagacaaaaaggaataaatttgcatgctaagtaacagaaccacaaacca |
37727071 |
T |
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| Q |
110 |
gacatggatctgcaatacnnnnnnncgccataaatctaaaacactgacaaaaacaacggcaacaacaagaacatcatgaaagcagctagaaggtctaact |
209 |
Q |
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| T |
37727072 |
gacatggatctgcaatacaaaaaaacgccataaatctaaaacactgacaaaaacaacg-caacaacaagaacatcatgaaagcagctagaaggtctaact |
37727170 |
T |
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| Q |
210 |
tatttagtttatttagttaatgtgtttcaatacccgcagaagttatgctagtgaaaacgttaaattccaatcttggatatacttaacaactacatttatc |
309 |
Q |
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| T |
37727171 |
tatttagtttatttagttaatgtgtttcaatacccgcagaagttatgctagtgaaaacgttaaattccaatcttggatatacttaacaactacatttata |
37727270 |
T |
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| Q |
310 |
ttgttttgt |
318 |
Q |
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| T |
37727271 |
ttgttttgt |
37727279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 34809888 - 34809817
Alignment:
| Q |
46 |
tccagaaaagaatgaaagacaaaaaggaataaatttgcatgctaagtaacagaaccacaaaccagacatgga |
117 |
Q |
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||||||||| |||| | |||||||||||||||||| |||||| | ||||||| ||||||||| | |||||| |
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| T |
34809888 |
tccagaaaaaaatgtacaacaaaaaggaataaattttcatgctcaataacagacccacaaaccggtcatgga |
34809817 |
T |
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