View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4908_low_39 (Length: 320)
Name: NF4908_low_39
Description: NF4908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4908_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 6533468 - 6533723
Alignment:
| Q |
19 |
ggaacacacttttattccgagtttatgttaaaattgcccgtattccgcggaactcgaaccttaaatttgtccgaataaaagttcaatattgagtttgtga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6533468 |
ggaacacacttttattccgagtttatgttaaaattgctagtattccgccgaactcgaaccttaaatttgtccgaataaaagttcaatattgagtttgtga |
6533567 |
T |
|
| Q |
119 |
aaattccaacttccaccannnnnnnatgtgacttttcaacttccactttgtcaatacatatttctgttccgaaaaatgaaattttatgtttatggaatag |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6533568 |
aaattccaacttccaccatttttttatgtgacttttcaacttccactttgtcaatacatatttctgttccgaaaaatgaaattttatgtttatggaatag |
6533667 |
T |
|
| Q |
219 |
cgtaaaattgaagaaattcatttgcgttccgacaagctgtaaggaaacgagtttga |
274 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6533668 |
ctttaaattgaagaaattcatttgcgttccgacaagctgtaaggaaacgagtttga |
6533723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University